Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
TPM4P67936 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TPM4P67936 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.96■□□□□ 0.79
TPM4P67936 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 WWOX-216ENST00000569818 525 ntBASIC19.96■□□□□ 0.79
TPM4P67936 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.96■□□□□ 0.79
TPM4P67936 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.96■□□□□ 0.79
TPM4P67936 AC011676.5-201ENST00000624864 2660 ntBASIC19.96■□□□□ 0.79
TPM4P67936 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TPM4P67936 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.95■□□□□ 0.79
TPM4P67936 AC100803.2-201ENST00000562459 1963 ntBASIC19.95■□□□□ 0.78
TPM4P67936 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
TPM4P67936 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TPM4P67936 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
TPM4P67936 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.95■□□□□ 0.78
TPM4P67936 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.95■□□□□ 0.78
TPM4P67936 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.95■□□□□ 0.78
TPM4P67936 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TPM4P67936 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.95■□□□□ 0.78
TPM4P67936 CR769767.2-201ENST00000622735 460 ntBASIC19.95■□□□□ 0.78
TPM4P67936 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.95■□□□□ 0.78
TPM4P67936 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TPM4P67936 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.95■□□□□ 0.78
TPM4P67936 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
TPM4P67936 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TPM4P67936 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 LINC00304-203ENST00000565008 1864 ntBASIC19.94■□□□□ 0.78
TPM4P67936 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
TPM4P67936 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TPM4P67936 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TPM4P67936 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.94■□□□□ 0.78
TPM4P67936 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.94■□□□□ 0.78
TPM4P67936 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TPM4P67936 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.94■□□□□ 0.78
TPM4P67936 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.94■□□□□ 0.78
TPM4P67936 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.94■□□□□ 0.78
TPM4P67936 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.94■□□□□ 0.78
TPM4P67936 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.94■□□□□ 0.78
TPM4P67936 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
TPM4P67936 AC092666.2-201ENST00000613287 246 ntBASIC19.94■□□□□ 0.78
TPM4P67936 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TPM4P67936 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.94■□□□□ 0.78
TPM4P67936 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
TPM4P67936 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.94■□□□□ 0.78
TPM4P67936 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TPM4P67936 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms