Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.89■□□□□ 0.61
COL4A4P53420 AC008667.4-201ENST00000607370 168 ntBASIC18.89■□□□□ 0.61
COL4A4P53420 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.89■□□□□ 0.61
COL4A4P53420 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.89■□□□□ 0.61
COL4A4P53420 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
COL4A4P53420 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.89■□□□□ 0.61
COL4A4P53420 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
COL4A4P53420 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A4P53420 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A4P53420 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
COL4A4P53420 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL4A4P53420 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A4P53420 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A4P53420 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A4P53420 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A4P53420 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.88■□□□□ 0.61
COL4A4P53420 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A4P53420 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A4P53420 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.88■□□□□ 0.61
COL4A4P53420 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A4P53420 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A4P53420 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL4A4P53420 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.87■□□□□ 0.61
COL4A4P53420 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A4P53420 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A4P53420 RPS15P9-201ENST00000494093 319 ntBASIC18.87■□□□□ 0.61
COL4A4P53420 AC122714.2-201ENST00000502787 707 ntBASIC18.87■□□□□ 0.61
COL4A4P53420 KRT19P2-202ENST00000557173 1012 ntBASIC18.87■□□□□ 0.61
COL4A4P53420 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL4A4P53420 AL805961.1-202ENST00000641562 540 ntBASIC18.87■□□□□ 0.61
COL4A4P53420 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
COL4A4P53420 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A4P53420 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL4A4P53420 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A4P53420 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL4A4P53420 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A4P53420 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL4A4P53420 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL4A4P53420 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
COL4A4P53420 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 MRPL20P1-201ENST00000400819 433 ntBASIC18.86■□□□□ 0.61
COL4A4P53420 AC096633.1-201ENST00000422446 749 ntBASIC18.86■□□□□ 0.61
COL4A4P53420 FAM58CP-201ENST00000435741 640 ntBASIC18.86■□□□□ 0.61
COL4A4P53420 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.86■□□□□ 0.61
COL4A4P53420 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A4P53420 AC091812.2-201ENST00000619081 385 ntBASIC18.86■□□□□ 0.61
COL4A4P53420 AC004706.3-202ENST00000621574 984 ntBASIC18.86■□□□□ 0.61
COL4A4P53420 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A4P53420 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A4P53420 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms