Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
COL18A1P39060 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
COL18A1P39060 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.32
COL18A1P39060 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC23.27■■□□□ 1.32
COL18A1P39060 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 SLBP-205ENST00000488267 987 ntTSL 2 BASIC23.27■■□□□ 1.32
COL18A1P39060 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC23.27■■□□□ 1.32
COL18A1P39060 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC23.27■■□□□ 1.32
COL18A1P39060 REM2-202ENST00000536884 1331 ntTSL 2 BASIC23.27■■□□□ 1.32
COL18A1P39060 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL18A1P39060 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.31
COL18A1P39060 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
COL18A1P39060 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
COL18A1P39060 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.31
COL18A1P39060 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
COL18A1P39060 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL18A1P39060 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL18A1P39060 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL18A1P39060 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL18A1P39060 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC23.26■■□□□ 1.31
COL18A1P39060 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL18A1P39060 PAWRP1-201ENST00000451083 565 ntBASIC23.26■■□□□ 1.31
COL18A1P39060 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC23.26■■□□□ 1.31
COL18A1P39060 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC23.26■■□□□ 1.31
COL18A1P39060 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC23.26■■□□□ 1.31
COL18A1P39060 AL390955.2-201ENST00000603032 514 ntBASIC23.26■■□□□ 1.31
COL18A1P39060 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC23.26■■□□□ 1.31
COL18A1P39060 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
COL18A1P39060 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL18A1P39060 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL18A1P39060 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.25■■□□□ 1.31
COL18A1P39060 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL18A1P39060 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC23.25■■□□□ 1.31
COL18A1P39060 KLK8-202ENST00000320838 456 ntTSL 5 BASIC23.25■■□□□ 1.31
COL18A1P39060 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL18A1P39060 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL18A1P39060 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC23.25■■□□□ 1.31
COL18A1P39060 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
COL18A1P39060 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.25■■□□□ 1.31
COL18A1P39060 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC23.25■■□□□ 1.31
COL18A1P39060 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL18A1P39060 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
COL18A1P39060 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
COL18A1P39060 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 AL627223.1-201ENST00000416693 442 ntBASIC23.24■■□□□ 1.31
COL18A1P39060 FALEC-201ENST00000416894 566 ntTSL 3 BASIC23.24■■□□□ 1.31
COL18A1P39060 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC23.24■■□□□ 1.31
COL18A1P39060 CCDC74BP1-201ENST00000508880 1123 ntBASIC23.24■■□□□ 1.31
COL18A1P39060 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC23.24■■□□□ 1.31
COL18A1P39060 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC23.24■■□□□ 1.31
COL18A1P39060 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
COL18A1P39060 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC23.24■■□□□ 1.31
COL18A1P39060 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC23.24■■□□□ 1.31
COL18A1P39060 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
COL18A1P39060 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
COL18A1P39060 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC23.24■■□□□ 1.31
COL18A1P39060 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC23.24■■□□□ 1.31
COL18A1P39060 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC23.24■■□□□ 1.31
COL18A1P39060 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL18A1P39060 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC23.24■■□□□ 1.31
COL18A1P39060 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL18A1P39060 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL18A1P39060 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.23■■□□□ 1.31
COL18A1P39060 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.23■■□□□ 1.31
COL18A1P39060 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
COL18A1P39060 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL18A1P39060 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL18A1P39060 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC23.23■■□□□ 1.31
COL18A1P39060 SLC25A6P2-201ENST00000497974 877 ntBASIC23.23■■□□□ 1.31
COL18A1P39060 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC23.23■■□□□ 1.31
COL18A1P39060 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC23.23■■□□□ 1.31
COL18A1P39060 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL18A1P39060 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC23.23■■□□□ 1.31
COL18A1P39060 AL121761.2-201ENST00000598007 1648 ntBASIC23.23■■□□□ 1.31
COL18A1P39060 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
COL18A1P39060 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC23.22■■□□□ 1.31
COL18A1P39060 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL18A1P39060 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC23.22■■□□□ 1.31
COL18A1P39060 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC23.22■■□□□ 1.31
COL18A1P39060 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
COL18A1P39060 IGHV3-52-201ENST00000519770 353 ntBASIC23.22■■□□□ 1.31
COL18A1P39060 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms