Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SGCEO43556 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SGCEO43556 KRT18P55-202ENST00000578578 1546 ntBASIC15.78■□□□□ 0.12
SGCEO43556 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SGCEO43556 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SGCEO43556 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SGCEO43556 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SGCEO43556 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SGCEO43556 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
SGCEO43556 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.77■□□□□ 0.12
SGCEO43556 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
SGCEO43556 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC15.77■□□□□ 0.12
SGCEO43556 HBZP1-201ENST00000354915 429 ntBASIC15.77■□□□□ 0.12
SGCEO43556 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SGCEO43556 AC022616.7-201ENST00000525383 220 ntBASIC15.77■□□□□ 0.12
SGCEO43556 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.77■□□□□ 0.12
SGCEO43556 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.77■□□□□ 0.12
SGCEO43556 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.77■□□□□ 0.12
SGCEO43556 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC15.77■□□□□ 0.12
SGCEO43556 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
SGCEO43556 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SGCEO43556 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.77■□□□□ 0.12
SGCEO43556 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.77■□□□□ 0.12
SGCEO43556 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SGCEO43556 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.77■□□□□ 0.11
SGCEO43556 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
SGCEO43556 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
SGCEO43556 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
SGCEO43556 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.11
SGCEO43556 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SGCEO43556 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.76■□□□□ 0.11
SGCEO43556 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.76■□□□□ 0.11
SGCEO43556 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.76■□□□□ 0.11
SGCEO43556 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SGCEO43556 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.76■□□□□ 0.11
SGCEO43556 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.76■□□□□ 0.11
SGCEO43556 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 DUX4L26-201ENST00000489078 1255 ntBASIC15.76■□□□□ 0.11
SGCEO43556 AP003733.1-201ENST00000491725 852 ntBASIC15.76■□□□□ 0.11
SGCEO43556 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
SGCEO43556 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SGCEO43556 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.76■□□□□ 0.11
SGCEO43556 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SGCEO43556 LINC01311-201ENST00000565162 1445 ntBASIC15.76■□□□□ 0.11
SGCEO43556 GNAS-203ENST00000306120 1878 ntBASIC15.76■□□□□ 0.11
SGCEO43556 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SGCEO43556 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SGCEO43556 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms