Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL049757.1-201ENST00000616842 1596 ntBASIC19.95■□□□□ 0.78
MSH4O15457 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH4O15457 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
MSH4O15457 AP005117.1-201ENST00000584346 1413 ntBASIC19.95■□□□□ 0.78
MSH4O15457 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
MSH4O15457 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
MSH4O15457 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH4O15457 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
MSH4O15457 FAAHP1-202ENST00000446499 1238 ntBASIC19.95■□□□□ 0.78
MSH4O15457 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.95■□□□□ 0.78
MSH4O15457 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.95■□□□□ 0.78
MSH4O15457 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
MSH4O15457 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.95■□□□□ 0.78
MSH4O15457 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.95■□□□□ 0.78
MSH4O15457 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.95■□□□□ 0.78
MSH4O15457 AC104692.2-201ENST00000603054 253 ntBASIC19.95■□□□□ 0.78
MSH4O15457 AC019129.2-201ENST00000609837 1235 ntBASIC19.95■□□□□ 0.78
MSH4O15457 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
MSH4O15457 AL031008.1-201ENST00000619963 541 ntBASIC19.95■□□□□ 0.78
MSH4O15457 AP000867.4-201ENST00000641616 219 ntBASIC19.95■□□□□ 0.78
MSH4O15457 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
MSH4O15457 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH4O15457 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH4O15457 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH4O15457 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
MSH4O15457 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.94■□□□□ 0.78
MSH4O15457 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 AC103564.2-201ENST00000432853 1299 ntBASIC19.94■□□□□ 0.78
MSH4O15457 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.94■□□□□ 0.78
MSH4O15457 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.94■□□□□ 0.78
MSH4O15457 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH4O15457 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
MSH4O15457 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MSH4O15457 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 RNF165-205ENST00000588679 2904 ntBASIC19.93■□□□□ 0.78
MSH4O15457 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
MSH4O15457 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH4O15457 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MSH4O15457 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH4O15457 AC018470.1-201ENST00000624790 3129 ntBASIC19.93■□□□□ 0.78
MSH4O15457 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH4O15457 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MSH4O15457 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH4O15457 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.93■□□□□ 0.78
MSH4O15457 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.93■□□□□ 0.78
MSH4O15457 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
MSH4O15457 AL355877.3-201ENST00000622820 899 ntBASIC19.93■□□□□ 0.78
MSH4O15457 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH4O15457 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH4O15457 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH4O15457 KRT8P10-201ENST00000450021 1447 ntBASIC19.93■□□□□ 0.78
MSH4O15457 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH4O15457 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH4O15457 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
MSH4O15457 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH4O15457 PMPCAP1-201ENST00000508114 1576 ntBASIC19.92■□□□□ 0.78
MSH4O15457 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH4O15457 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH4O15457 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH4O15457 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH4O15457 RBM17P3-201ENST00000417687 1192 ntBASIC19.92■□□□□ 0.78
MSH4O15457 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.92■□□□□ 0.78
MSH4O15457 FGFR3P6-201ENST00000457012 610 ntBASIC19.92■□□□□ 0.78
MSH4O15457 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms