Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
SLC28A1O00337 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.15■□□□□ 0.34
SLC28A1O00337 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.15■□□□□ 0.34
SLC28A1O00337 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 AC087499.1-201ENST00000418141 1075 ntBASIC17.15■□□□□ 0.34
SLC28A1O00337 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 COX11P1-201ENST00000489116 835 ntBASIC17.15■□□□□ 0.34
SLC28A1O00337 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.15■□□□□ 0.34
SLC28A1O00337 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 AC009154.2-201ENST00000621177 724 ntBASIC17.15■□□□□ 0.34
SLC28A1O00337 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.15■□□□□ 0.34
SLC28A1O00337 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
SLC28A1O00337 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.15■□□□□ 0.34
SLC28A1O00337 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.15■□□□□ 0.34
SLC28A1O00337 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SLC28A1O00337 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.15■□□□□ 0.34
SLC28A1O00337 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.14■□□□□ 0.34
SLC28A1O00337 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SLC28A1O00337 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SLC28A1O00337 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SLC28A1O00337 REXO1L11P-201ENST00000620964 1927 ntBASIC17.14■□□□□ 0.33
SLC28A1O00337 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.14■□□□□ 0.33
SLC28A1O00337 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.14■□□□□ 0.33
SLC28A1O00337 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.14■□□□□ 0.33
SLC28A1O00337 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SLC28A1O00337 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.14■□□□□ 0.33
SLC28A1O00337 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.14■□□□□ 0.33
SLC28A1O00337 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.14■□□□□ 0.33
SLC28A1O00337 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SLC28A1O00337 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SLC28A1O00337 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.14■□□□□ 0.33
SLC28A1O00337 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SLC28A1O00337 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
SLC28A1O00337 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 TSPY12P-201ENST00000421279 868 ntBASIC17.13■□□□□ 0.33
SLC28A1O00337 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.13■□□□□ 0.33
SLC28A1O00337 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 AC093827.2-201ENST00000512654 315 ntBASIC17.13■□□□□ 0.33
SLC28A1O00337 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.13■□□□□ 0.33
SLC28A1O00337 AC004263.2-201ENST00000617183 678 ntBASIC17.13■□□□□ 0.33
SLC28A1O00337 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.13■□□□□ 0.33
SLC28A1O00337 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SLC28A1O00337 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 CROCCP2-202ENST00000412962 2773 ntBASIC17.13■□□□□ 0.33
SLC28A1O00337 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.13■□□□□ 0.33
SLC28A1O00337 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SLC28A1O00337 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.13■□□□□ 0.33
SLC28A1O00337 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
SLC28A1O00337 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
SLC28A1O00337 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SLC28A1O00337 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SLC28A1O00337 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SLC28A1O00337 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SLC28A1O00337 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SLC28A1O00337 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.12■□□□□ 0.33
SLC28A1O00337 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
SLC28A1O00337 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms