Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 IRX1P1-201ENST00000438849 1838 ntBASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 AC020907.1-201ENST00000616460 1350 ntBASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 PKD1P6-201ENST00000343738 4769 ntBASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC85CA6NKD9 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 ALG1L8P-201ENST00000533887 760 ntBASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 RHOQP1-201ENST00000555758 579 ntBASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 MIR6775-201ENST00000617557 69 ntBASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC85CA6NKD9 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 BNIP3P42-201ENST00000454982 569 ntBASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 BNIP3P29-201ENST00000598302 571 ntBASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 AC011447.5-201ENST00000616168 564 ntBASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC85CA6NKD9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms