Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.624e-13■□□□□ 10.1
NIP7Q9Y221 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.614e-13■□□□□ 10.1
NIP7Q9Y221 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.571e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.59■□□□□ 0.571e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.541e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-244ENST00000435080 1710 ntTSL 518.23■□□□□ 0.511e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-206ENST00000588552 5443 ntTSL 1 (best)18.16■□□□□ 0.51e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-209ENST00000599577 5052 ntAPPRIS P1 TSL 1 (best)17.78■□□□□ 0.441e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-245ENST00000437771 2407 ntTSL 517.77■□□□□ 0.441e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.424e-13■□□□□ 10.1
NIP7Q9Y221 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.352e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-254ENST00000456286 807 ntTSL 1 (best)17.15■□□□□ 0.341e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.254e-13■□□□□ 10.1
NIP7Q9Y221 NDRG1-216ENST00000521026 2145 ntTSL 216.43■□□□□ 0.221e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-253ENST00000454165 544 ntTSL 316.25■□□□□ 0.191e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-255ENST00000456622 859 ntTSL 516.03■□□□□ 0.161e-6■□□□□ 10.1
NIP7Q9Y221 NDRG1-217ENST00000521414 2349 ntTSL 215.91■□□□□ 0.141e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-239ENST00000424176 747 ntTSL 315.84■□□□□ 0.131e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.121e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-207ENST00000599534 5115 ntAPPRIS P1 TSL 1 (best)15.43■□□□□ 0.061e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-242ENST00000433828 902 ntTSL 215.1■□□□□ 0.011e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-203ENST00000595671 2054 ntTSL 1 (best)14.89□□□□□ -0.031e-6■□□□□ 10.1
NIP7Q9Y221 SERPINA3-208ENST00000556968 1289 ntTSL 1 (best)14.54□□□□□ -0.082e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-241ENST00000428326 1051 ntTSL 514.49□□□□□ -0.091e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-237ENST00000375976 3644 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.121e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC14.25□□□□□ -0.131e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC13.96□□□□□ -0.171e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-201ENST00000262963 4766 ntTSL 5 BASIC13.9□□□□□ -0.181e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-210ENST00000592099 4766 ntTSL 1 (best) BASIC13.9□□□□□ -0.181e-6■□□□□ 10.1
NIP7Q9Y221 AC068580.4-203ENST00000636397 4038 ntAPPRIS P5 TSL 5 BASIC13.81□□□□□ -0.24e-13■□□□□ 10.1
NIP7Q9Y221 RPL29-201ENST00000294189 723 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.22e-10■□□□□ 10.1
NIP7Q9Y221 PTPRS-202ENST00000353284 4518 ntTSL 5 BASIC13.52□□□□□ -0.251e-6■□□□□ 10.1
NIP7Q9Y221 SERPINA3-202ENST00000393080 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.262e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC13.33□□□□□ -0.281e-6■□□□□ 10.1
NIP7Q9Y221 SERPINA3-201ENST00000393078 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.322e-10■□□□□ 10.1
NIP7Q9Y221 SERPINA3-204ENST00000482740 2420 ntTSL 1 (best) BASIC12.67□□□□□ -0.382e-10■□□□□ 10.1
NIP7Q9Y221 NDRG1-218ENST00000521438 2810 ntTSL 212.41□□□□□ -0.421e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.431e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.461e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-205ENST00000597281 2037 ntTSL 1 (best)11.84□□□□□ -0.511e-6■□□□□ 10.1
NIP7Q9Y221 RPL29-205ENST00000480306 719 ntTSL 211.77□□□□□ -0.532e-10■□□□□ 10.1
NIP7Q9Y221 PEG3-201ENST00000326441 8723 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.751e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-207ENST00000601070 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.811e-6■□□□□ 10.1
NIP7Q9Y221 LRP1-206ENST00000554118 418 ntTSL 29.77□□□□□ -0.855e-9■□□□□ 10.1
NIP7Q9Y221 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.532e-10■□□□□ 10.1
NIP7Q9Y221 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.639e-11■□□□□ 10.1
NIP7Q9Y221 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.241e-323■□□□□ 10
NIP7Q9Y221 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.44e-11■□□□□ 10
NIP7Q9Y221 C3-207ENST00000596238 563 ntTSL 210.43□□□□□ -0.747e-29■□□□□ 10
NIP7Q9Y221 SNORD13-201ENST00000459299 104 ntBASIC2.36□□□□□ -2.031e-40■□□□□ 10
NIP7Q9Y221 FN1-219ENST00000474036 1058 ntTSL 26.57□□□□□ -1.361e-41■□□□□ 10
NIP7Q9Y221 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.71■■□□□ 1.072e-6■□□□□ 10
NIP7Q9Y221 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.242e-6■□□□□ 10
NIP7Q9Y221 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.042e-6■□□□□ 10
NIP7Q9Y221 PSAP-206ENST00000633965 500 ntTSL 59.34□□□□□ -0.912e-6■□□□□ 10
NIP7Q9Y221 NCL-202ENST00000356936 890 ntTSL 322.37■■□□□ 1.171e-323■□□□□ 10
NIP7Q9Y221 NCL-208ENST00000466274 671 ntTSL 27.92□□□□□ -1.141e-323■□□□□ 10
NIP7Q9Y221 SNORD20-201ENST00000384550 80 ntBASIC-0.62□□□□□ -2.511e-323■□□□□ 10
NIP7Q9Y221 A2M-211ENST00000543436 600 ntTSL 514.92□□□□□ -0.022e-18■□□□□ 10
NIP7Q9Y221 LGALS3BP-207ENST00000587311 1905 ntTSL 221.1■□□□□ 0.972e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-204ENST00000586720 1736 ntTSL 520.24■□□□□ 0.832e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.03■□□□□ 0.82e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-205ENST00000587251 2091 ntTSL 519.56■□□□□ 0.722e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.112e-15■□□□□ 9.9
NIP7Q9Y221 C3-215ENST00000601008 303 ntTSL 55.65□□□□□ -1.51e-20■□□□□ 9.9
NIP7Q9Y221 APOH-203ENST00000581797 748 ntTSL 38.78□□□□□ -14e-8■□□□□ 9.9
NIP7Q9Y221 APOH-202ENST00000577982 707 ntTSL 55.81□□□□□ -1.484e-8■□□□□ 9.9
NIP7Q9Y221 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.894e-8■□□□□ 9.9
NIP7Q9Y221 RPL13A-211ENST00000486930 652 ntTSL 320.48■□□□□ 0.871e-323■□□□□ 9.9
NIP7Q9Y221 SNORD32A-201ENST00000364805 84 ntBASIC2.04□□□□□ -2.081e-323■□□□□ 9.9
NIP7Q9Y221 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.022e-16■□□□□ 9.9
NIP7Q9Y221 A2M-212ENST00000545828 471 ntTSL 46.08□□□□□ -1.442e-16■□□□□ 9.9
NIP7Q9Y221 BSG-208ENST00000573784 559 ntTSL 425.07■■□□□ 1.63e-19■□□□□ 9.9
NIP7Q9Y221 BSG-211ENST00000576984 544 ntTSL 423.8■■□□□ 1.43e-19■□□□□ 9.9
NIP7Q9Y221 BSG-207ENST00000573216 545 ntTSL 422.76■■□□□ 1.233e-19■□□□□ 9.9
NIP7Q9Y221 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.073e-19■□□□□ 9.9
NIP7Q9Y221 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.54■■□□□ 1.043e-19■□□□□ 9.9
NIP7Q9Y221 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.39■■□□□ 1.013e-19■□□□□ 9.9
NIP7Q9Y221 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.02■□□□□ 0.963e-19■□□□□ 9.9
NIP7Q9Y221 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.02■□□□□ 0.963e-19■□□□□ 9.9
NIP7Q9Y221 BSG-213ENST00000613627 689 ntTSL 320.16■□□□□ 0.823e-19■□□□□ 9.9
NIP7Q9Y221 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.97■□□□□ 0.793e-19■□□□□ 9.9
NIP7Q9Y221 BSG-206ENST00000572899 582 ntTSL 219.94■□□□□ 0.783e-19■□□□□ 9.9
NIP7Q9Y221 BSG-205ENST00000571735 2155 ntTSL 219.09■□□□□ 0.653e-19■□□□□ 9.9
NIP7Q9Y221 NDRG1-212ENST00000519278 3983 ntTSL 210.53□□□□□ -0.726e-7■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-206ENST00000587310 768 ntTSL 221.54■■□□□ 1.044e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-215ENST00000589775 893 ntTSL 320.36■□□□□ 0.854e-15■□□□□ 9.8
NIP7Q9Y221 C3-214ENST00000600763 406 ntTSL 320.03■□□□□ 0.82e-43■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-210ENST00000588508 882 ntTSL 219.38■□□□□ 0.694e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.25■□□□□ 0.674e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-214ENST00000589527 818 ntTSL 318.37■□□□□ 0.534e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-211ENST00000588587 1020 ntTSL 517.8■□□□□ 0.444e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-208ENST00000588198 1132 ntTSL 217.62■□□□□ 0.414e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-216ENST00000589906 540 ntTSL 317.41■□□□□ 0.384e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-219ENST00000592255 556 ntTSL 216.29■□□□□ 0.24e-15■□□□□ 9.8
NIP7Q9Y221 C3-212ENST00000599899 1992 ntTSL 29.5□□□□□ -0.892e-20■□□□□ 9.8
NIP7Q9Y221 SERPINA1-215ENST00000556955 571 ntTSL 417.98■□□□□ 0.472e-66■□□□□ 9.8
NIP7Q9Y221 SERPINA1-214ENST00000556091 643 ntTSL 316.54■□□□□ 0.242e-66■□□□□ 9.8
NIP7Q9Y221 SERPINA1-219ENST00000557492 951 ntTSL 415.77■□□□□ 0.122e-66■□□□□ 9.8
NIP7Q9Y221 SERPINA1-212ENST00000554720 446 ntTSL 59.3□□□□□ -0.922e-66■□□□□ 9.8
Retrieved 100 of 1,619 protein–RNA pairs in 60.4 ms