Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 ABCD1P5-201ENST00000445663 754 ntBASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AC134043.2-201ENST00000624206 2238 ntBASIC18.59■□□□□ 0.57
USP3Q9Y6I4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AIRN-201ENST00000601203 4374 ntBASIC18.59■□□□□ 0.57
USP3Q9Y6I4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.59■□□□□ 0.57
USP3Q9Y6I4 BX276092.7-203ENST00000637198 1536 ntBASIC18.59■□□□□ 0.57
USP3Q9Y6I4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.58■□□□□ 0.57
USP3Q9Y6I4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AC103564.2-201ENST00000432853 1299 ntBASIC18.58■□□□□ 0.56
USP3Q9Y6I4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AC104692.2-201ENST00000603054 253 ntBASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AP001269.4-201ENST00000609611 512 ntBASIC18.58■□□□□ 0.56
USP3Q9Y6I4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AD001527.2-201ENST00000622994 785 ntBASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AP000867.4-201ENST00000641616 219 ntBASIC18.58■□□□□ 0.56
USP3Q9Y6I4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP3Q9Y6I4 AP005117.1-201ENST00000584346 1413 ntBASIC18.57■□□□□ 0.56
USP3Q9Y6I4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 RBM17P3-201ENST00000417687 1192 ntBASIC18.57■□□□□ 0.56
USP3Q9Y6I4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 AC012317.2-201ENST00000623305 2251 ntBASIC18.57■□□□□ 0.56
USP3Q9Y6I4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.57■□□□□ 0.56
USP3Q9Y6I4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms