Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 AL049757.1-201ENST00000616842 1596 ntBASIC19.02■□□□□ 0.64
SIX4Q9UIU6 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 NOC2LP2-201ENST00000407594 1944 ntBASIC19.02■□□□□ 0.64
SIX4Q9UIU6 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 AF238378.1-201ENST00000526806 358 ntBASIC19.02■□□□□ 0.64
SIX4Q9UIU6 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SIX4Q9UIU6 AL133373.2-201ENST00000623187 2828 ntBASIC19.01■□□□□ 0.63
SIX4Q9UIU6 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 AC106795.1-205ENST00000512851 1056 ntBASIC19.01■□□□□ 0.63
SIX4Q9UIU6 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX4Q9UIU6 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 PC-208ENST00000529047 1607 ntTSL 3 BASIC19■□□□□ 0.63
SIX4Q9UIU6 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19■□□□□ 0.63
SIX4Q9UIU6 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 ABCD1P5-201ENST00000445663 754 ntBASIC19■□□□□ 0.63
SIX4Q9UIU6 SAPCD2P3-201ENST00000455031 850 ntBASIC19■□□□□ 0.63
SIX4Q9UIU6 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19■□□□□ 0.63
SIX4Q9UIU6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SIX4Q9UIU6 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19■□□□□ 0.63
SIX4Q9UIU6 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19■□□□□ 0.63
SIX4Q9UIU6 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 AD001527.2-201ENST00000622994 785 ntBASIC19■□□□□ 0.63
SIX4Q9UIU6 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 AP000867.4-201ENST00000641616 219 ntBASIC19■□□□□ 0.63
SIX4Q9UIU6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19■□□□□ 0.63
SIX4Q9UIU6 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 AC068880.1-201ENST00000507289 2297 ntBASIC19■□□□□ 0.63
SIX4Q9UIU6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SIX4Q9UIU6 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX4Q9UIU6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
SIX4Q9UIU6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19■□□□□ 0.63
SIX4Q9UIU6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms