Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 AC009949.1-201ENST00000623048 1830 ntBASIC18.36■□□□□ 0.53
USP29Q9HBJ7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 AL645929.1-201ENST00000420084 975 ntBASIC18.35■□□□□ 0.53
USP29Q9HBJ7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 REXO1L11P-201ENST00000620964 1927 ntBASIC18.35■□□□□ 0.53
USP29Q9HBJ7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 LINC00304-203ENST00000565008 1864 ntBASIC18.35■□□□□ 0.53
USP29Q9HBJ7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP29Q9HBJ7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.34■□□□□ 0.53
USP29Q9HBJ7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 SIRPAP1-201ENST00000448467 1770 ntBASIC18.34■□□□□ 0.53
USP29Q9HBJ7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP29Q9HBJ7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP29Q9HBJ7 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 MIR662-201ENST00000384847 95 ntBASIC18.33■□□□□ 0.52
USP29Q9HBJ7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP29Q9HBJ7 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms