Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 AC124067.4-201ENST00000519691 2379 ntBASIC15.57■□□□□ 0.08
NKX3-1Q99801 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 HOXB1-202ENST00000577092 1414 ntBASIC15.57■□□□□ 0.08
NKX3-1Q99801 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
NKX3-1Q99801 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.57■□□□□ 0.08
NKX3-1Q99801 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 INGX-201ENST00000359239 846 ntBASIC15.56■□□□□ 0.08
NKX3-1Q99801 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 RBM17P1-201ENST00000453646 1190 ntBASIC15.56■□□□□ 0.08
NKX3-1Q99801 RPS20-210ENST00000523936 899 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 LINC01023-201ENST00000606054 436 ntBASIC15.56■□□□□ 0.08
NKX3-1Q99801 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.56■□□□□ 0.08
NKX3-1Q99801 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX3-1Q99801 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX3-1Q99801 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 UNC93B2-201ENST00000285383 730 ntBASIC15.55■□□□□ 0.08
NKX3-1Q99801 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms