Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 AC010336.2-201ENST00000564226 506 ntBASIC17.48■□□□□ 0.39
VPS13AQ96RL7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 AP001059.3-201ENST00000619053 235 ntBASIC17.48■□□□□ 0.39
VPS13AQ96RL7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ESPNP-201ENST00000270691 2015 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 TUBB3P1-201ENST00000405796 1332 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 KLF2P3-201ENST00000451977 1087 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 AC008667.4-201ENST00000607370 168 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 MIR1909-201ENST00000411312 80 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 BASP1P1-201ENST00000430708 665 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 AC027307.3-201ENST00000594262 1100 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 AL353135.1-201ENST00000606729 504 ntBASIC17.47■□□□□ 0.39
VPS13AQ96RL7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS13AQ96RL7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 U91328.1-201ENST00000437528 223 ntBASIC17.46■□□□□ 0.39
VPS13AQ96RL7 TIMM8BP1-201ENST00000452384 211 ntBASIC17.46■□□□□ 0.39
VPS13AQ96RL7 AC023141.13-201ENST00000604991 943 ntBASIC17.46■□□□□ 0.39
VPS13AQ96RL7 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 AC074386.1-202ENST00000463561 864 ntBASIC17.46■□□□□ 0.39
VPS13AQ96RL7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 AC067863.1-201ENST00000494933 530 ntBASIC17.46■□□□□ 0.39
VPS13AQ96RL7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.46■□□□□ 0.39
VPS13AQ96RL7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS13AQ96RL7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC003669.1-201ENST00000334569 611 ntBASIC17.45■□□□□ 0.38
VPS13AQ96RL7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 AL033527.4-201ENST00000641026 673 ntBASIC17.45■□□□□ 0.38
VPS13AQ96RL7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13AQ96RL7 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms