Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC42Q96M95 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC42Q96M95 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 AC009947.2-201ENST00000444014 672 ntBASIC19.24■□□□□ 0.67
CCDC42Q96M95 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 MIR3917-201ENST00000580971 93 ntBASIC19.24■□□□□ 0.67
CCDC42Q96M95 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.24■□□□□ 0.67
CCDC42Q96M95 AC092865.7-201ENST00000641832 219 ntBASIC19.24■□□□□ 0.67
CCDC42Q96M95 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC42Q96M95 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC42Q96M95 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 INGX-201ENST00000359239 846 ntBASIC19.23■□□□□ 0.67
CCDC42Q96M95 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 AC128688.1-201ENST00000487626 519 ntBASIC19.23■□□□□ 0.67
CCDC42Q96M95 AC008550.1-201ENST00000511500 884 ntBASIC19.23■□□□□ 0.67
CCDC42Q96M95 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC42Q96M95 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC42Q96M95 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 AL512604.3-201ENST00000569583 964 ntBASIC19.22■□□□□ 0.67
CCDC42Q96M95 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 LINC01451-201ENST00000623792 534 ntBASIC19.22■□□□□ 0.67
CCDC42Q96M95 AC009949.1-201ENST00000623048 1830 ntBASIC19.22■□□□□ 0.67
CCDC42Q96M95 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC42Q96M95 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 NKILA-202ENST00000614771 2598 ntBASIC19.22■□□□□ 0.67
CCDC42Q96M95 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC42Q96M95 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms