Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.8■□□□□ 0.44
ECHDC3Q96DC8 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AC103564.2-201ENST00000432853 1299 ntBASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 ABCD1P5-201ENST00000445663 754 ntBASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 FAAHP1-202ENST00000446499 1238 ntBASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AP001269.4-201ENST00000609611 512 ntBASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AD001527.2-201ENST00000622994 785 ntBASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.79■□□□□ 0.44
ECHDC3Q96DC8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AC008764.6-201ENST00000595909 2069 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AC004870.1-201ENST00000315132 882 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TPM4P1-201ENST00000436100 807 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AF238378.1-201ENST00000526806 358 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AC019129.2-201ENST00000609837 1235 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AP000867.4-201ENST00000641616 219 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AL049757.1-201ENST00000616842 1596 ntBASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.78■□□□□ 0.44
ECHDC3Q96DC8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 AC020763.4-201ENST00000623414 4170 ntBASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 RBM17P3-201ENST00000417687 1192 ntBASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 AC005104.2-201ENST00000427818 678 ntBASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.77■□□□□ 0.44
ECHDC3Q96DC8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms