Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.82■■□□□ 1.08
USP48Q86UV5 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.82■■□□□ 1.08
USP48Q86UV5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.82■■□□□ 1.08
USP48Q86UV5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.82■■□□□ 1.08
USP48Q86UV5 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.82■■□□□ 1.08
USP48Q86UV5 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 AC034105.1-201ENST00000563488 319 ntBASIC21.82■■□□□ 1.08
USP48Q86UV5 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.82■■□□□ 1.08
USP48Q86UV5 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC21.82■■□□□ 1.08
USP48Q86UV5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
USP48Q86UV5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
USP48Q86UV5 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.82■■□□□ 1.08
USP48Q86UV5 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
USP48Q86UV5 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
USP48Q86UV5 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP48Q86UV5 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
USP48Q86UV5 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP48Q86UV5 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.81■■□□□ 1.08
USP48Q86UV5 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
USP48Q86UV5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC21.81■■□□□ 1.08
USP48Q86UV5 LBH-204ENST00000406087 559 ntTSL 4 BASIC21.81■■□□□ 1.08
USP48Q86UV5 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.81■■□□□ 1.08
USP48Q86UV5 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 AC021087.4-201ENST00000563761 564 ntBASIC21.81■■□□□ 1.08
USP48Q86UV5 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.81■■□□□ 1.08
USP48Q86UV5 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.81■■□□□ 1.08
USP48Q86UV5 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP48Q86UV5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
USP48Q86UV5 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USP48Q86UV5 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
USP48Q86UV5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.8■■□□□ 1.08
USP48Q86UV5 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
USP48Q86UV5 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 RPS2P1-201ENST00000434010 821 ntBASIC21.8■■□□□ 1.08
USP48Q86UV5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC21.8■■□□□ 1.08
USP48Q86UV5 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 AC092910.1-201ENST00000482027 1129 ntBASIC21.8■■□□□ 1.08
USP48Q86UV5 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.8■■□□□ 1.08
USP48Q86UV5 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC21.8■■□□□ 1.08
USP48Q86UV5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.8■■□□□ 1.08
USP48Q86UV5 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.8■■□□□ 1.08
USP48Q86UV5 AC005336.2-201ENST00000593183 939 ntBASIC21.8■■□□□ 1.08
USP48Q86UV5 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.8■■□□□ 1.08
USP48Q86UV5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.8■■□□□ 1.08
USP48Q86UV5 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
USP48Q86UV5 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
USP48Q86UV5 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP48Q86UV5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.79■■□□□ 1.08
USP48Q86UV5 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.79■■□□□ 1.08
USP48Q86UV5 YBX2P1-201ENST00000394192 760 ntBASIC21.79■■□□□ 1.08
USP48Q86UV5 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.79■■□□□ 1.08
USP48Q86UV5 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.79■■□□□ 1.08
USP48Q86UV5 KRT18P3-201ENST00000451602 1288 ntBASIC21.79■■□□□ 1.08
USP48Q86UV5 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.79■■□□□ 1.08
USP48Q86UV5 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 MIR3687-2-201ENST00000577708 61 ntBASIC21.79■■□□□ 1.08
USP48Q86UV5 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.79■■□□□ 1.08
USP48Q86UV5 MIR3687-1-201ENST00000614492 61 ntBASIC21.79■■□□□ 1.08
USP48Q86UV5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms