Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HDAC4P56524 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 GUSBP12-201ENST00000513727 720 ntBASIC18.62■□□□□ 0.57
HDAC4P56524 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HDAC4P56524 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
HDAC4P56524 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HDAC4P56524 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.62■□□□□ 0.57
HDAC4P56524 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.62■□□□□ 0.57
HDAC4P56524 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC4P56524 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
HDAC4P56524 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
HDAC4P56524 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 BX276092.5-203ENST00000456199 560 ntBASIC18.61■□□□□ 0.57
HDAC4P56524 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.61■□□□□ 0.57
HDAC4P56524 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.61■□□□□ 0.57
HDAC4P56524 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 AC090616.6-201ENST00000582640 721 ntBASIC18.61■□□□□ 0.57
HDAC4P56524 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 AL353801.3-201ENST00000609898 542 ntBASIC18.61■□□□□ 0.57
HDAC4P56524 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 AP000550.4-202ENST00000639755 178 ntBASIC18.61■□□□□ 0.57
HDAC4P56524 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC4P56524 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
HDAC4P56524 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HDAC4P56524 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.61■□□□□ 0.57
HDAC4P56524 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.6■□□□□ 0.57
HDAC4P56524 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.6■□□□□ 0.57
HDAC4P56524 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 AL121672.3-201ENST00000608644 468 ntBASIC18.6■□□□□ 0.57
HDAC4P56524 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 AC124864.1-201ENST00000623408 392 ntBASIC18.6■□□□□ 0.57
HDAC4P56524 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.6■□□□□ 0.57
HDAC4P56524 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HDAC4P56524 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms