Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX3P41225 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX3P41225 AP002383.4-201ENST00000442518 975 ntBASIC16.78■□□□□ 0.28
SOX3P41225 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX3P41225 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 AP002414.4-201ENST00000589764 1148 ntBASIC16.78■□□□□ 0.28
SOX3P41225 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX3P41225 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX3P41225 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SOX3P41225 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SOX3P41225 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
SOX3P41225 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 KRT18P1-202ENST00000452408 1331 ntBASIC16.77■□□□□ 0.28
SOX3P41225 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX3P41225 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX3P41225 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
SOX3P41225 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX3P41225 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.77■□□□□ 0.28
SOX3P41225 AC008687.5-201ENST00000593746 558 ntBASIC16.77■□□□□ 0.28
SOX3P41225 AC004263.2-201ENST00000617183 678 ntBASIC16.77■□□□□ 0.28
SOX3P41225 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX3P41225 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX3P41225 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX3P41225 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.77■□□□□ 0.27
SOX3P41225 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX3P41225 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SOX3P41225 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.77■□□□□ 0.27
SOX3P41225 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.77■□□□□ 0.27
SOX3P41225 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SOX3P41225 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX3P41225 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX3P41225 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX3P41225 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX3P41225 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SOX3P41225 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX3P41225 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX3P41225 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SOX3P41225 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.76■□□□□ 0.27
SOX3P41225 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX3P41225 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SOX3P41225 MIR3180-1-201ENST00000580374 94 ntBASIC16.76■□□□□ 0.27
SOX3P41225 MIR3180-3-201ENST00000584616 94 ntBASIC16.76■□□□□ 0.27
SOX3P41225 AC092329.2-201ENST00000598402 547 ntBASIC16.76■□□□□ 0.27
SOX3P41225 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX3P41225 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SOX3P41225 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SOX3P41225 LINC01126-201ENST00000623515 1646 ntBASIC16.76■□□□□ 0.27
SOX3P41225 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms