Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 Z92544.3-201ENST00000624747 417 ntBASIC21.21■□□□□ 0.99
COL4A5P29400 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A5P29400 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
COL4A5P29400 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A5P29400 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A5P29400 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A5P29400 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A5P29400 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
COL4A5P29400 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A5P29400 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
COL4A5P29400 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A5P29400 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A5P29400 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.2■□□□□ 0.98
COL4A5P29400 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COL4A5P29400 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A5P29400 AL121761.2-201ENST00000598007 1648 ntBASIC21.2■□□□□ 0.98
COL4A5P29400 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A5P29400 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A5P29400 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
COL4A5P29400 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.2■□□□□ 0.98
COL4A5P29400 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.2■□□□□ 0.98
COL4A5P29400 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.2■□□□□ 0.98
COL4A5P29400 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.2■□□□□ 0.98
COL4A5P29400 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A5P29400 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.2■□□□□ 0.98
COL4A5P29400 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A5P29400 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
COL4A5P29400 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COL4A5P29400 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.19■□□□□ 0.98
COL4A5P29400 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 AJ011932.1-201ENST00000621707 465 ntBASIC21.19■□□□□ 0.98
COL4A5P29400 AC007064.4-201ENST00000637740 555 ntBASIC21.19■□□□□ 0.98
COL4A5P29400 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL4A5P29400 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A5P29400 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
COL4A5P29400 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A5P29400 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A5P29400 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 REXO1L3P-201ENST00000622202 1288 ntBASIC21.18■□□□□ 0.98
COL4A5P29400 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 AL590787.1-201ENST00000568856 1315 ntBASIC21.18■□□□□ 0.98
COL4A5P29400 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 AC009949.1-201ENST00000623048 1830 ntBASIC21.18■□□□□ 0.98
COL4A5P29400 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A5P29400 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A5P29400 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A5P29400 AC069262.1-201ENST00000539058 672 ntBASIC21.18■□□□□ 0.98
COL4A5P29400 DUX4L27-201ENST00000554796 1261 ntBASIC21.18■□□□□ 0.98
COL4A5P29400 AC015911.4-201ENST00000588022 1070 ntBASIC21.18■□□□□ 0.98
COL4A5P29400 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A5P29400 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL4A5P29400 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A5P29400 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
COL4A5P29400 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL4A5P29400 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.17■□□□□ 0.98
COL4A5P29400 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL4A5P29400 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 AC092474.2-201ENST00000424288 719 ntBASIC21.17■□□□□ 0.98
COL4A5P29400 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.17■□□□□ 0.98
COL4A5P29400 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
COL4A5P29400 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.17■□□□□ 0.98
COL4A5P29400 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms