Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.38■□□□□ 0.37
TNFP01375 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TNFP01375 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.38■□□□□ 0.37
TNFP01375 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.38■□□□□ 0.37
TNFP01375 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TNFP01375 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TNFP01375 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
TNFP01375 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 AC087289.5-201ENST00000586076 3175 ntBASIC17.37■□□□□ 0.37
TNFP01375 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.37■□□□□ 0.37
TNFP01375 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.37■□□□□ 0.37
TNFP01375 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.37■□□□□ 0.37
TNFP01375 MIR7706-201ENST00000613747 67 ntBASIC17.37■□□□□ 0.37
TNFP01375 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 AC116407.3-201ENST00000623905 1129 ntBASIC17.37■□□□□ 0.37
TNFP01375 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.37■□□□□ 0.37
TNFP01375 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 AC243591.1-201ENST00000452967 1364 ntBASIC17.37■□□□□ 0.37
TNFP01375 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.37■□□□□ 0.37
TNFP01375 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TNFP01375 REXO1L9P-201ENST00000604264 2108 ntBASIC17.36■□□□□ 0.37
TNFP01375 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 AC079776.2-201ENST00000641154 1609 ntBASIC17.36■□□□□ 0.37
TNFP01375 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.36■□□□□ 0.37
TNFP01375 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
TNFP01375 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.36■□□□□ 0.37
TNFP01375 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TNFP01375 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.36■□□□□ 0.37
TNFP01375 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.36■□□□□ 0.37
TNFP01375 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.36■□□□□ 0.37
TNFP01375 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.36■□□□□ 0.37
TNFP01375 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 AC004408.2-201ENST00000623613 2777 ntBASIC17.36■□□□□ 0.37
TNFP01375 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.36■□□□□ 0.37
TNFP01375 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.36■□□□□ 0.37
TNFP01375 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TNFP01375 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.35■□□□□ 0.37
TNFP01375 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 SIRPAP1-201ENST00000448467 1770 ntBASIC17.35■□□□□ 0.37
TNFP01375 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.35■□□□□ 0.37
TNFP01375 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.35■□□□□ 0.37
TNFP01375 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms