Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.84■□□□□ 0.45
SHOX2O60902 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 AC083906.2-201ENST00000511578 360 ntBASIC17.84■□□□□ 0.45
SHOX2O60902 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.84■□□□□ 0.45
SHOX2O60902 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHOX2O60902 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.84■□□□□ 0.45
SHOX2O60902 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SHOX2O60902 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHOX2O60902 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
SHOX2O60902 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SHOX2O60902 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.83■□□□□ 0.44
SHOX2O60902 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.83■□□□□ 0.44
SHOX2O60902 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.83■□□□□ 0.44
SHOX2O60902 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.83■□□□□ 0.44
SHOX2O60902 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.83■□□□□ 0.44
SHOX2O60902 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.83■□□□□ 0.44
SHOX2O60902 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.83■□□□□ 0.44
SHOX2O60902 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SHOX2O60902 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
SHOX2O60902 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.83■□□□□ 0.44
SHOX2O60902 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 AC099063.4-201ENST00000641099 1602 ntBASIC17.83■□□□□ 0.44
SHOX2O60902 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.83■□□□□ 0.44
SHOX2O60902 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHOX2O60902 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SHOX2O60902 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SHOX2O60902 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 AC126177.1-201ENST00000547829 2218 ntBASIC17.82■□□□□ 0.44
SHOX2O60902 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
SHOX2O60902 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.82■□□□□ 0.44
SHOX2O60902 AC091874.3-201ENST00000512672 1195 ntBASIC17.82■□□□□ 0.44
SHOX2O60902 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.82■□□□□ 0.44
SHOX2O60902 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.82■□□□□ 0.44
SHOX2O60902 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.82■□□□□ 0.44
SHOX2O60902 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.82■□□□□ 0.44
SHOX2O60902 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms