Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AL033527.4-201ENST00000641026 673 ntBASIC30.23■■■□□ 2.43
CUX2O14529 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CUX2O14529 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC30.23■■■□□ 2.43
CUX2O14529 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CUX2O14529 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
CUX2O14529 AL032819.2-201ENST00000624543 2162 ntBASIC30.23■■■□□ 2.43
CUX2O14529 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX2O14529 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX2O14529 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CUX2O14529 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX2O14529 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX2O14529 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC30.22■■■□□ 2.43
CUX2O14529 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX2O14529 SPDYE11-202ENST00000450699 704 ntBASIC30.22■■■□□ 2.43
CUX2O14529 SPDYE9P-201ENST00000570642 692 ntBASIC30.22■■■□□ 2.43
CUX2O14529 SPDYE10P-202ENST00000612005 668 ntBASIC30.22■■■□□ 2.43
CUX2O14529 SPDYE8P-202ENST00000612377 668 ntBASIC30.22■■■□□ 2.43
CUX2O14529 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX2O14529 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC30.22■■■□□ 2.43
CUX2O14529 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX2O14529 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC30.21■■■□□ 2.43
CUX2O14529 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX2O14529 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX2O14529 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX2O14529 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC30.21■■■□□ 2.43
CUX2O14529 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC30.21■■■□□ 2.43
CUX2O14529 AC069120.2-201ENST00000524091 540 ntBASIC30.21■■■□□ 2.43
CUX2O14529 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC30.21■■■□□ 2.43
CUX2O14529 INO80E-210ENST00000567705 880 ntTSL 3 BASIC30.21■■■□□ 2.43
CUX2O14529 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC30.21■■■□□ 2.43
CUX2O14529 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC30.21■■■□□ 2.43
CUX2O14529 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX2O14529 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
CUX2O14529 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CUX2O14529 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
CUX2O14529 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.43
CUX2O14529 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
CUX2O14529 AC097493.3-201ENST00000509725 367 ntBASIC30.2■■■□□ 2.43
CUX2O14529 PACS1-203ENST00000524815 628 ntTSL 4 BASIC30.2■■■□□ 2.43
CUX2O14529 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC30.2■■■□□ 2.43
CUX2O14529 AL162274.1-201ENST00000617191 1098 ntBASIC30.2■■■□□ 2.43
CUX2O14529 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC30.2■■■□□ 2.43
CUX2O14529 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC30.2■■■□□ 2.43
CUX2O14529 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
CUX2O14529 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.43
CUX2O14529 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CUX2O14529 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC30.2■■■□□ 2.42
CUX2O14529 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC30.2■■■□□ 2.42
CUX2O14529 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC30.19■■■□□ 2.42
CUX2O14529 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
CUX2O14529 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
CUX2O14529 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC30.19■■■□□ 2.42
CUX2O14529 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC30.19■■■□□ 2.42
CUX2O14529 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC30.19■■■□□ 2.42
CUX2O14529 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 RN7SL589P-201ENST00000481268 310 ntBASIC30.19■■■□□ 2.42
CUX2O14529 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC30.19■■■□□ 2.42
CUX2O14529 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC30.19■■■□□ 2.42
CUX2O14529 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC30.19■■■□□ 2.42
CUX2O14529 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 AC148477.5-201ENST00000625164 1645 ntBASIC30.19■■■□□ 2.42
CUX2O14529 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
CUX2O14529 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX2O14529 CXCL1P1-201ENST00000502804 216 ntBASIC30.19■■■□□ 2.42
CUX2O14529 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC30.19■■■□□ 2.42
CUX2O14529 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC30.19■■■□□ 2.42
CUX2O14529 SNAI3-AS1-205ENST00000568633 2096 ntBASIC30.18■■■□□ 2.42
CUX2O14529 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC30.18■■■□□ 2.42
CUX2O14529 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC30.18■■■□□ 2.42
CUX2O14529 GID4-202ENST00000376345 1391 ntTSL 3 BASIC30.18■■■□□ 2.42
CUX2O14529 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CUX2O14529 SPTLC1P1-201ENST00000447199 261 ntBASIC30.18■■■□□ 2.42
CUX2O14529 FAM86C2P-203ENST00000528684 1004 ntBASIC30.18■■■□□ 2.42
CUX2O14529 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CUX2O14529 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CUX2O14529 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC30.18■■■□□ 2.42
CUX2O14529 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX2O14529 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC30.17■■■□□ 2.42
CUX2O14529 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CUX2O14529 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC30.17■■■□□ 2.42
CUX2O14529 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CUX2O14529 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC30.17■■■□□ 2.42
CUX2O14529 AL592309.1-201ENST00000443127 649 ntBASIC30.17■■■□□ 2.42
CUX2O14529 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC30.17■■■□□ 2.42
CUX2O14529 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
CUX2O14529 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC30.16■■■□□ 2.42
CUX2O14529 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms