Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HMGN4O00479 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.58■□□□□ 0.25
HMGN4O00479 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGN4O00479 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HMGN4O00479 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.58■□□□□ 0.24
HMGN4O00479 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 AC211429.1-201ENST00000415277 523 ntBASIC16.58■□□□□ 0.24
HMGN4O00479 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGN4O00479 HOMER2P1-201ENST00000455653 964 ntBASIC16.58■□□□□ 0.24
HMGN4O00479 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGN4O00479 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.58■□□□□ 0.24
HMGN4O00479 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGN4O00479 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGN4O00479 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.58■□□□□ 0.24
HMGN4O00479 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.58■□□□□ 0.24
HMGN4O00479 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 AL353692.3-201ENST00000407031 1396 ntBASIC16.58■□□□□ 0.24
HMGN4O00479 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGN4O00479 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGN4O00479 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGN4O00479 AC106820.2-201ENST00000563775 3264 ntBASIC16.57■□□□□ 0.24
HMGN4O00479 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGN4O00479 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGN4O00479 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGN4O00479 AC112907.2-201ENST00000448639 330 ntBASIC16.57■□□□□ 0.24
HMGN4O00479 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGN4O00479 AL359075.1-203ENST00000462729 1002 ntBASIC16.57■□□□□ 0.24
HMGN4O00479 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGN4O00479 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGN4O00479 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 GPR32P1-201ENST00000601788 811 ntBASIC16.57■□□□□ 0.24
HMGN4O00479 HYMAI.1-201ENST00000620949 238 ntBASIC16.57■□□□□ 0.24
HMGN4O00479 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HMGN4O00479 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGN4O00479 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
HMGN4O00479 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGN4O00479 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HMGN4O00479 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGN4O00479 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGN4O00479 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGN4O00479 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 AK4P3-201ENST00000418260 669 ntBASIC16.56■□□□□ 0.24
HMGN4O00479 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.56■□□□□ 0.24
HMGN4O00479 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
HMGN4O00479 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.56■□□□□ 0.24
HMGN4O00479 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGN4O00479 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGN4O00479 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGN4O00479 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms