Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 AL353593.2-201ENST00000602529 1483 ntBASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 AC025062.2-201ENST00000605477 670 ntBASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 BX640515.1-201ENST00000617215 977 ntBASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMIM28A0A1B0GU29 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC019129.2-201ENST00000609837 1235 ntBASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC073592.4-201ENST00000623827 446 ntBASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC073592.5-201ENST00000624854 528 ntBASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 AC135050.7-201ENST00000624508 2218 ntBASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMIM28A0A1B0GU29 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 AL022342.1-201ENST00000400363 863 ntBASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 AL354751.1-201ENST00000412768 1863 ntBASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMIM28A0A1B0GU29 AL590627.1-203ENST00000421194 1026 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms