Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 HLA-F-220ENST00000434407 884 ntBASIC18.44■□□□□ 0.54
PCDH9Q9HC56 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.44■□□□□ 0.54
PCDH9Q9HC56 HYMAI.1-201ENST00000620949 238 ntBASIC18.44■□□□□ 0.54
PCDH9Q9HC56 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCDH9Q9HC56 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 LINC00304-203ENST00000565008 1864 ntBASIC18.43■□□□□ 0.54
PCDH9Q9HC56 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 LINC01311-201ENST00000565162 1445 ntBASIC18.43■□□□□ 0.54
PCDH9Q9HC56 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 HBZP1-201ENST00000354915 429 ntBASIC18.43■□□□□ 0.54
PCDH9Q9HC56 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 AL671277.2-201ENST00000458060 996 ntBASIC18.43■□□□□ 0.54
PCDH9Q9HC56 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 NTF6B-201ENST00000591913 560 ntBASIC18.43■□□□□ 0.54
PCDH9Q9HC56 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 AL590326.2-201ENST00000625139 305 ntBASIC18.43■□□□□ 0.54
PCDH9Q9HC56 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCDH9Q9HC56 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 AC113404.2-201ENST00000507884 177 ntBASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCDH9Q9HC56 LINC00602-201ENST00000629776 2065 ntBASIC18.42■□□□□ 0.54
PCDH9Q9HC56 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms