Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.06■□□□□ 0.16
PTP4A1Q93096 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTP4A1Q93096 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTP4A1Q93096 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PTP4A1Q93096 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTP4A1Q93096 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 AC009947.2-201ENST00000444014 672 ntBASIC16.04■□□□□ 0.16
PTP4A1Q93096 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 MIR3917-201ENST00000580971 93 ntBASIC16.04■□□□□ 0.16
PTP4A1Q93096 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 FAM87A-204ENST00000613235 858 ntBASIC16.04■□□□□ 0.16
PTP4A1Q93096 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 AC097493.4-201ENST00000641197 219 ntBASIC16.04■□□□□ 0.16
PTP4A1Q93096 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 AC084018.2-201ENST00000613093 2607 ntBASIC16.04■□□□□ 0.16
PTP4A1Q93096 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTP4A1Q93096 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PTP4A1Q93096 REXO1L11P-201ENST00000620964 1927 ntBASIC16.04■□□□□ 0.16
PTP4A1Q93096 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms