Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 AL691403.2-201ENST00000618460 490 ntBASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 ZNF259P1-201ENST00000407656 1365 ntBASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 AC011840.4-201ENST00000578471 627 ntBASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.08■□□□□ 0.97
NKX2-3Q8TAU0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.08■□□□□ 0.96
NKX2-3Q8TAU0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 AL139424.1-201ENST00000607572 797 ntBASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
NKX2-3Q8TAU0 AC022898.2-201ENST00000616822 1312 ntBASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 KRT18P55-202ENST00000578578 1546 ntBASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 RCN1P2-201ENST00000398357 915 ntBASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 NUS1P2-201ENST00000417358 873 ntBASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 AC006116.8-202ENST00000587620 1550 ntBASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-3Q8TAU0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms