Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 KRT16P1-201ENST00000399124 1418 ntBASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 UBALD1-205ENST00000590891 2641 ntBASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 KRT18P21-201ENST00000515767 1272 ntBASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 AC012306.2-201ENST00000609350 630 ntBASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ZNF540Q8NDQ6 AL355312.1-201ENST00000407115 2176 ntBASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 TSPY15P-201ENST00000457163 923 ntBASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 PRSS44-201ENST00000515154 1146 ntBASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 CR392000.1-201ENST00000624770 1228 ntBASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 AL031985.4-201ENST00000642138 673 ntBASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ZNF540Q8NDQ6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
ZNF540Q8NDQ6 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms