Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 AC096633.1-201ENST00000422446 749 ntBASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 SART3-203ENST00000546611 1184 ntBASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 AC021087.4-201ENST00000563761 564 ntBASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 AL356309.3-201ENST00000624132 1934 ntBASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 AL096828.2-201ENST00000567259 1965 ntBASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 TNXA-203ENST00000507684 2038 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AL020996.1-203ENST00000536896 2307 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC093503.3-201ENST00000624917 2352 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 MED15P5-201ENST00000423150 992 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC098831.1-202ENST00000438821 336 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 HNRNPDP1-201ENST00000439535 754 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AL139424.1-201ENST00000607572 797 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC079781.4-201ENST00000641908 219 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC104109.2-201ENST00000602919 1418 ntBASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDDC3Q8N4P3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 AC010460.3-201ENST00000511359 1579 ntBASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 MIR3687-2-201ENST00000577708 61 ntBASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 MIR3687-1-201ENST00000614492 61 ntBASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 FAM197Y3-203ENST00000618346 717 ntBASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDDC3Q8N4P3 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms