Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 AL121894.2-201ENST00000602977 491 ntBASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 AC006116.8-202ENST00000587620 1550 ntBASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 IGHGP-201ENST00000390555 1178 ntBASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 KRT18P65-201ENST00000439811 1286 ntBASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 KRT8P26-201ENST00000534154 1276 ntBASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 AC092329.2-201ENST00000598402 547 ntBASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PTCHD3Q3KNS1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.46■□□□□ 0.38
PTCHD3Q3KNS1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
PTCHD3Q3KNS1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
PTCHD3Q3KNS1 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
PTCHD3Q3KNS1 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PTCHD3Q3KNS1 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 AP002383.4-201ENST00000442518 975 ntBASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PTCHD3Q3KNS1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms