Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.22■□□□□ 0.83
CCNA1P78396 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 PRSS29P-201ENST00000440800 595 ntBASIC20.22■□□□□ 0.83
CCNA1P78396 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.22■□□□□ 0.83
CCNA1P78396 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.22■□□□□ 0.83
CCNA1P78396 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.22■□□□□ 0.83
CCNA1P78396 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 AC132938.5-201ENST00000624980 1813 ntBASIC20.22■□□□□ 0.83
CCNA1P78396 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.22■□□□□ 0.83
CCNA1P78396 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
CCNA1P78396 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.21■□□□□ 0.83
CCNA1P78396 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 AC108073.2-201ENST00000464002 357 ntBASIC20.21■□□□□ 0.83
CCNA1P78396 YBX1P5-201ENST00000509441 847 ntBASIC20.21■□□□□ 0.83
CCNA1P78396 IGHV3-65-201ENST00000523210 341 ntBASIC20.21■□□□□ 0.83
CCNA1P78396 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.21■□□□□ 0.83
CCNA1P78396 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CCNA1P78396 SNHG9-202ENST00000564014 471 ntBASIC20.21■□□□□ 0.83
CCNA1P78396 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
CCNA1P78396 AC008667.4-201ENST00000607370 168 ntBASIC20.21■□□□□ 0.83
CCNA1P78396 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.21■□□□□ 0.83
CCNA1P78396 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.21■□□□□ 0.83
CCNA1P78396 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CCNA1P78396 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.21■□□□□ 0.83
CCNA1P78396 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCNA1P78396 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CCNA1P78396 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCNA1P78396 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.2■□□□□ 0.82
CCNA1P78396 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.2■□□□□ 0.82
CCNA1P78396 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.2■□□□□ 0.82
CCNA1P78396 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.2■□□□□ 0.82
CCNA1P78396 AL596442.2-201ENST00000610240 980 ntBASIC20.2■□□□□ 0.82
CCNA1P78396 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.2■□□□□ 0.82
CCNA1P78396 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCNA1P78396 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.2■□□□□ 0.82
CCNA1P78396 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CCNA1P78396 KRT18P28-201ENST00000453838 1332 ntBASIC20.2■□□□□ 0.82
CCNA1P78396 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.2■□□□□ 0.82
CCNA1P78396 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CCNA1P78396 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCNA1P78396 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.2■□□□□ 0.82
CCNA1P78396 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.2■□□□□ 0.82
CCNA1P78396 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.19■□□□□ 0.82
CCNA1P78396 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CCNA1P78396 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CCNA1P78396 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.19■□□□□ 0.82
CCNA1P78396 AC073592.3-201ENST00000625118 1834 ntBASIC20.19■□□□□ 0.82
CCNA1P78396 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.19■□□□□ 0.82
CCNA1P78396 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.19■□□□□ 0.82
CCNA1P78396 RPS15P9-201ENST00000494093 319 ntBASIC20.19■□□□□ 0.82
CCNA1P78396 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CCNA1P78396 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.19■□□□□ 0.82
CCNA1P78396 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.19■□□□□ 0.82
CCNA1P78396 AC116407.2-201ENST00000613639 860 ntBASIC20.19■□□□□ 0.82
CCNA1P78396 C20orf181-201ENST00000623918 480 ntBASIC20.19■□□□□ 0.82
CCNA1P78396 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCNA1P78396 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.19■□□□□ 0.82
CCNA1P78396 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCNA1P78396 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms