Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.08■□□□□ 0.81
CIITAP33076 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 LINC01711-201ENST00000598340 967 ntBASIC20.08■□□□□ 0.81
CIITAP33076 AL691432.3-201ENST00000621860 400 ntBASIC20.08■□□□□ 0.81
CIITAP33076 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CIITAP33076 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CIITAP33076 AC006116.8-202ENST00000587620 1550 ntBASIC20.08■□□□□ 0.8
CIITAP33076 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CIITAP33076 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CIITAP33076 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.08■□□□□ 0.8
CIITAP33076 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CIITAP33076 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 AC103564.2-201ENST00000432853 1299 ntBASIC20.07■□□□□ 0.8
CIITAP33076 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.07■□□□□ 0.8
CIITAP33076 EMBP1-201ENST00000458200 901 ntBASIC20.07■□□□□ 0.8
CIITAP33076 AC106795.1-205ENST00000512851 1056 ntBASIC20.07■□□□□ 0.8
CIITAP33076 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.07■□□□□ 0.8
CIITAP33076 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.07■□□□□ 0.8
CIITAP33076 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 AD001527.2-201ENST00000622994 785 ntBASIC20.07■□□□□ 0.8
CIITAP33076 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CIITAP33076 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.07■□□□□ 0.8
CIITAP33076 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.07■□□□□ 0.8
CIITAP33076 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.06■□□□□ 0.8
CIITAP33076 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CIITAP33076 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.06■□□□□ 0.8
CIITAP33076 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 AC008764.6-201ENST00000595909 2069 ntBASIC20.06■□□□□ 0.8
CIITAP33076 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.06■□□□□ 0.8
CIITAP33076 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 ABCD1P5-201ENST00000445663 754 ntBASIC20.06■□□□□ 0.8
CIITAP33076 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.06■□□□□ 0.8
CIITAP33076 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CIITAP33076 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.06■□□□□ 0.8
CIITAP33076 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.06■□□□□ 0.8
CIITAP33076 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.06■□□□□ 0.8
CIITAP33076 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.06■□□□□ 0.8
CIITAP33076 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 AP000867.4-201ENST00000641616 219 ntBASIC20.06■□□□□ 0.8
CIITAP33076 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
CIITAP33076 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.06■□□□□ 0.8
CIITAP33076 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CIITAP33076 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.06■□□□□ 0.8
CIITAP33076 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 AL049757.1-201ENST00000616842 1596 ntBASIC20.05■□□□□ 0.8
CIITAP33076 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.05■□□□□ 0.8
CIITAP33076 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 AC005104.2-201ENST00000427818 678 ntBASIC20.05■□□□□ 0.8
CIITAP33076 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 FAAHP1-202ENST00000446499 1238 ntBASIC20.05■□□□□ 0.8
CIITAP33076 SAPCD2P3-201ENST00000455031 850 ntBASIC20.05■□□□□ 0.8
CIITAP33076 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.05■□□□□ 0.8
CIITAP33076 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.05■□□□□ 0.8
CIITAP33076 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.05■□□□□ 0.8
CIITAP33076 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.05■□□□□ 0.8
CIITAP33076 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.05■□□□□ 0.8
CIITAP33076 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CIITAP33076 AP001269.4-201ENST00000609611 512 ntBASIC20.05■□□□□ 0.8
CIITAP33076 AC019129.2-201ENST00000609837 1235 ntBASIC20.05■□□□□ 0.8
CIITAP33076 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.05■□□□□ 0.8
CIITAP33076 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.05■□□□□ 0.8
CIITAP33076 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms