Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 AP002414.1-201ENST00000391405 1147 ntBASIC20.7■□□□□ 0.9
COL2A1P02458 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.7■□□□□ 0.9
COL2A1P02458 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.7■□□□□ 0.9
COL2A1P02458 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.7■□□□□ 0.9
COL2A1P02458 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.7■□□□□ 0.9
COL2A1P02458 AL691403.2-201ENST00000618460 490 ntBASIC20.7■□□□□ 0.9
COL2A1P02458 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL2A1P02458 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.7■□□□□ 0.9
COL2A1P02458 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.7■□□□□ 0.9
COL2A1P02458 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL2A1P02458 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.7■□□□□ 0.9
COL2A1P02458 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.7■□□□□ 0.9
COL2A1P02458 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.7■□□□□ 0.9
COL2A1P02458 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL2A1P02458 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL2A1P02458 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.69■□□□□ 0.9
COL2A1P02458 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 IGLL3P-201ENST00000412472 434 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.69■□□□□ 0.9
COL2A1P02458 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.69■□□□□ 0.9
COL2A1P02458 KRT18P2-201ENST00000447938 1258 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 AC004967.1-201ENST00000453589 447 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.69■□□□□ 0.9
COL2A1P02458 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.69■□□□□ 0.9
COL2A1P02458 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.69■□□□□ 0.9
COL2A1P02458 MIR4751-201ENST00000578027 74 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 REXO1L9P-201ENST00000604264 2108 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.69■□□□□ 0.9
COL2A1P02458 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.69■□□□□ 0.9
COL2A1P02458 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.69■□□□□ 0.9
COL2A1P02458 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL2A1P02458 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
COL2A1P02458 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
COL2A1P02458 CRYGEP-201ENST00000412192 528 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 AP006288.1-201ENST00000446065 395 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.69■□□□□ 0.9
COL2A1P02458 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.69■□□□□ 0.9
COL2A1P02458 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
COL2A1P02458 MTDHP5-201ENST00000598980 586 ntBASIC20.69■□□□□ 0.9
COL2A1P02458 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.69■□□□□ 0.9
COL2A1P02458 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 VN2R19P-201ENST00000442399 1052 ntBASIC20.68■□□□□ 0.9
COL2A1P02458 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.68■□□□□ 0.9
COL2A1P02458 YBX1P5-201ENST00000509441 847 ntBASIC20.68■□□□□ 0.9
COL2A1P02458 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.68■□□□□ 0.9
COL2A1P02458 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL2A1P02458 AP000997.3-201ENST00000623333 2250 ntBASIC20.68■□□□□ 0.9
COL2A1P02458 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL2A1P02458 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 AC090164.3-201ENST00000610780 2143 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.67■□□□□ 0.9
COL2A1P02458 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.67■□□□□ 0.9
COL2A1P02458 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.67■□□□□ 0.9
COL2A1P02458 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms