Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MSH4O15457 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.02■□□□□ 0.8
MSH4O15457 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.02■□□□□ 0.8
MSH4O15457 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSH4O15457 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.02■□□□□ 0.8
MSH4O15457 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
MSH4O15457 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH4O15457 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
MSH4O15457 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH4O15457 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
MSH4O15457 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.02■□□□□ 0.8
MSH4O15457 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 AC122714.2-201ENST00000502787 707 ntBASIC20.02■□□□□ 0.8
MSH4O15457 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH4O15457 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSH4O15457 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MSH4O15457 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.02■□□□□ 0.8
MSH4O15457 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH4O15457 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSH4O15457 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
MSH4O15457 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
MSH4O15457 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSH4O15457 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
MSH4O15457 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.02■□□□□ 0.79
MSH4O15457 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
MSH4O15457 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
MSH4O15457 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
MSH4O15457 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.01■□□□□ 0.79
MSH4O15457 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.01■□□□□ 0.79
MSH4O15457 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH4O15457 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.01■□□□□ 0.79
MSH4O15457 LINC01711-201ENST00000598340 967 ntBASIC20.01■□□□□ 0.79
MSH4O15457 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
MSH4O15457 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
MSH4O15457 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 AC008764.6-201ENST00000595909 2069 ntBASIC20.01■□□□□ 0.79
MSH4O15457 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH4O15457 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.01■□□□□ 0.79
MSH4O15457 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.01■□□□□ 0.79
MSH4O15457 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSH4O15457 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20■□□□□ 0.79
MSH4O15457 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
MSH4O15457 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
MSH4O15457 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20■□□□□ 0.79
MSH4O15457 SLC25A6P5-201ENST00000435663 894 ntBASIC20■□□□□ 0.79
MSH4O15457 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20■□□□□ 0.79
MSH4O15457 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20■□□□□ 0.79
MSH4O15457 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20■□□□□ 0.79
MSH4O15457 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
MSH4O15457 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20■□□□□ 0.79
MSH4O15457 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20■□□□□ 0.79
MSH4O15457 BMF-207ENST00000559701 630 ntTSL 3 BASIC20■□□□□ 0.79
MSH4O15457 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20■□□□□ 0.79
MSH4O15457 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 AP001269.4-201ENST00000609611 512 ntBASIC20■□□□□ 0.79
MSH4O15457 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20■□□□□ 0.79
MSH4O15457 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20■□□□□ 0.79
MSH4O15457 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSH4O15457 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.99■□□□□ 0.79
MSH4O15457 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH4O15457 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.99■□□□□ 0.79
MSH4O15457 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSH4O15457 AC012317.2-201ENST00000623305 2251 ntBASIC19.99■□□□□ 0.79
MSH4O15457 SIRPAP1-201ENST00000448467 1770 ntBASIC19.99■□□□□ 0.79
MSH4O15457 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms