Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HDAC3O15379 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC3O15379 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HDAC3O15379 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC3O15379 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC3O15379 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC3O15379 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC3O15379 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC3O15379 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC3O15379 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC3O15379 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.4■□□□□ 0.38
HDAC3O15379 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.39■□□□□ 0.38
HDAC3O15379 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
HDAC3O15379 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC3O15379 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC3O15379 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HDAC3O15379 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HDAC3O15379 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
HDAC3O15379 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.39■□□□□ 0.37
HDAC3O15379 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC3O15379 CCR12P-201ENST00000446203 998 ntBASIC17.39■□□□□ 0.37
HDAC3O15379 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.39■□□□□ 0.37
HDAC3O15379 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.39■□□□□ 0.37
HDAC3O15379 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.39■□□□□ 0.37
HDAC3O15379 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC3O15379 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.39■□□□□ 0.37
HDAC3O15379 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC3O15379 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC3O15379 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 AC009949.1-201ENST00000623048 1830 ntBASIC17.38■□□□□ 0.37
HDAC3O15379 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
HDAC3O15379 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.38■□□□□ 0.37
HDAC3O15379 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HDAC3O15379 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
HDAC3O15379 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.38■□□□□ 0.37
HDAC3O15379 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.38■□□□□ 0.37
HDAC3O15379 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HDAC3O15379 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HDAC3O15379 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC3O15379 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC3O15379 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HDAC3O15379 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.37■□□□□ 0.37
HDAC3O15379 KRT18P29-201ENST00000397031 1267 ntBASIC17.37■□□□□ 0.37
HDAC3O15379 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 AC012618.2-201ENST00000428058 849 ntBASIC17.37■□□□□ 0.37
HDAC3O15379 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 AC233702.5-201ENST00000584107 538 ntBASIC17.37■□□□□ 0.37
HDAC3O15379 AL049637.2-201ENST00000641778 930 ntBASIC17.37■□□□□ 0.37
HDAC3O15379 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HDAC3O15379 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HDAC3O15379 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms