Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SDCBPO00560 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 TNRC18P3-201ENST00000441896 2691 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 AC011676.5-201ENST00000624864 2660 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
SDCBPO00560 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SDCBPO00560 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.21■□□□□ 0.03
SDCBPO00560 NKILA-202ENST00000614771 2598 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 TSPY14P-201ENST00000303979 915 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SDCBPO00560 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.21■□□□□ 0.03
SDCBPO00560 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 AC093827.2-201ENST00000512654 315 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 EGLN1P1-201ENST00000531623 762 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.21■□□□□ 0.03
SDCBPO00560 AC010653.2-201ENST00000623505 997 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.21■□□□□ 0.03
SDCBPO00560 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.21■□□□□ 0.03
SDCBPO00560 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SDCBPO00560 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.21■□□□□ 0.03
SDCBPO00560 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.21■□□□□ 0.03
SDCBPO00560 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDCBPO00560 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.21■□□□□ 0.02
SDCBPO00560 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SDCBPO00560 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.21■□□□□ 0.02
SDCBPO00560 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.21■□□□□ 0.02
SDCBPO00560 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SDCBPO00560 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SDCBPO00560 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.2■□□□□ 0.02
SDCBPO00560 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 MMP23A-201ENST00000234610 1017 ntBASIC15.2■□□□□ 0.02
SDCBPO00560 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 MIR149-201ENST00000384879 89 ntBASIC15.2■□□□□ 0.02
SDCBPO00560 TSPY15P-201ENST00000457163 923 ntBASIC15.2■□□□□ 0.02
SDCBPO00560 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 WWOX-216ENST00000569818 525 ntBASIC15.2■□□□□ 0.02
SDCBPO00560 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDCBPO00560 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
SDCBPO00560 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SDCBPO00560 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SDCBPO00560 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
SDCBPO00560 KRT8P7-201ENST00000533003 1432 ntBASIC15.19■□□□□ 0.02
SDCBPO00560 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.19■□□□□ 0.02
SDCBPO00560 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.19■□□□□ 0.02
SDCBPO00560 LINC01126-201ENST00000623515 1646 ntBASIC15.19■□□□□ 0.02
SDCBPO00560 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SDCBPO00560 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.19■□□□□ 0.02
SDCBPO00560 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms