Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 KRT18P67-201ENST00000432816 1264 ntBASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 FAM197Y8-203ENST00000450145 560 ntBASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 AC008608.2-201ENST00000606089 416 ntBASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 BX640515.1-201ENST00000617215 977 ntBASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAIPQ9BWF2 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AC097374.2-201ENST00000618617 1306 ntBASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AL773604.1-201ENST00000617417 272 ntBASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 AC018470.1-201ENST00000624790 3129 ntBASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAIPQ9BWF2 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 AL022342.1-201ENST00000400363 863 ntBASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 FGFR3P6-201ENST00000457012 610 ntBASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 AC132938.6-201ENST00000623828 1655 ntBASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.54■□□□□ 0.72
TRAIPQ9BWF2 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms