Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.53■□□□□ 0.56
CDX2Q99626 AIRN-201ENST00000601203 4374 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
CDX2Q99626 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CDX2Q99626 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.53■□□□□ 0.56
CDX2Q99626 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.53■□□□□ 0.56
CDX2Q99626 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CDX2Q99626 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.53■□□□□ 0.56
CDX2Q99626 RN7SL589P-201ENST00000481268 310 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CDX2Q99626 AC243562.1-201ENST00000560672 389 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 AC004233.3-201ENST00000607794 1269 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 AC017083.2-201ENST00000608069 979 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 PI4KAP1-204ENST00000612579 1703 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 AL049757.1-201ENST00000616842 1596 ntBASIC18.53■□□□□ 0.56
CDX2Q99626 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.53■□□□□ 0.56
CDX2Q99626 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.53■□□□□ 0.56
CDX2Q99626 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX2Q99626 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CDX2Q99626 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CDX2Q99626 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.52■□□□□ 0.56
CDX2Q99626 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CDX2Q99626 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CDX2Q99626 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CDX2Q99626 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CDX2Q99626 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.52■□□□□ 0.56
CDX2Q99626 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CDX2Q99626 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
CDX2Q99626 MRPS18AP1-201ENST00000414458 589 ntBASIC18.52■□□□□ 0.56
CDX2Q99626 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.52■□□□□ 0.56
CDX2Q99626 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.52■□□□□ 0.56
CDX2Q99626 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 AC004890.2-204ENST00000481968 304 ntBASIC18.52■□□□□ 0.56
CDX2Q99626 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.52■□□□□ 0.56
CDX2Q99626 AC026150.2-201ENST00000564693 1156 ntBASIC18.52■□□□□ 0.56
CDX2Q99626 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.52■□□□□ 0.56
CDX2Q99626 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDX2Q99626 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
CDX2Q99626 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.52■□□□□ 0.56
CDX2Q99626 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CDX2Q99626 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
CDX2Q99626 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDX2Q99626 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CDX2Q99626 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CDX2Q99626 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CDX2Q99626 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.51■□□□□ 0.55
CDX2Q99626 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CDX2Q99626 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 SPDYE7P-202ENST00000420373 878 ntBASIC18.51■□□□□ 0.55
CDX2Q99626 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.51■□□□□ 0.55
CDX2Q99626 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CDX2Q99626 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.51■□□□□ 0.55
CDX2Q99626 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.51■□□□□ 0.55
CDX2Q99626 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CDX2Q99626 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX2Q99626 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX2Q99626 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX2Q99626 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.5■□□□□ 0.55
CDX2Q99626 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX2Q99626 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX2Q99626 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms