Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VPS13AQ96RL7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 FO538757.1-201ENST00000623083 1397 ntBASIC17.55■□□□□ 0.4
VPS13AQ96RL7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 AC004790.2-201ENST00000623588 572 ntBASIC17.55■□□□□ 0.4
VPS13AQ96RL7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS13AQ96RL7 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 FAM58CP-201ENST00000435741 640 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 KRT18P65-201ENST00000439811 1286 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 MIR943-201ENST00000401286 94 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 SERBP1P5-201ENST00000510079 1181 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 AC099522.2-201ENST00000607001 744 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 MIR6799-201ENST00000620297 69 ntBASIC17.54■□□□□ 0.4
VPS13AQ96RL7 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS13AQ96RL7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 AC008677.1-201ENST00000519230 1561 ntBASIC17.53■□□□□ 0.4
VPS13AQ96RL7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS13AQ96RL7 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13AQ96RL7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS13AQ96RL7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms