Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 LINC01568-207ENST00000641790 1380 ntBASIC18.55■□□□□ 0.56
ATG4AQ8WYN0 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 GCSHP2-201ENST00000560971 527 ntBASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 AL512604.3-201ENST00000569583 964 ntBASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.54■□□□□ 0.56
ATG4AQ8WYN0 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 AC022898.2-201ENST00000616822 1312 ntBASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 REXO1L11P-201ENST00000620964 1927 ntBASIC18.53■□□□□ 0.56
ATG4AQ8WYN0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 AL138688.1-201ENST00000624851 1594 ntBASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ATG4AQ8WYN0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
ATG4AQ8WYN0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATG4AQ8WYN0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms