Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 LINC00167-201ENST00000530583 1419 ntBASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLHC1Q8NHS4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 AC020916.1-201ENST00000587762 1774 ntBASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.18■□□□□ 0.34
CLHC1Q8NHS4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 DUTP2-201ENST00000519164 463 ntBASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 GCSHP2-201ENST00000560971 527 ntBASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 AL023973.1-201ENST00000624619 620 ntBASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 KRT18P22-201ENST00000402024 1347 ntBASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLHC1Q8NHS4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLHC1Q8NHS4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms