Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 AL020989.1-201ENST00000422979 469 ntBASIC18.79■□□□□ 0.6
CHD9Q3L8U1 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 TSPY16P-201ENST00000449843 468 ntBASIC18.79■□□□□ 0.6
CHD9Q3L8U1 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD9Q3L8U1 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 INGX-202ENST00000489074 768 ntBASIC18.78■□□□□ 0.6
CHD9Q3L8U1 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.78■□□□□ 0.6
CHD9Q3L8U1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AP002414.1-201ENST00000391405 1147 ntBASIC18.77■□□□□ 0.6
CHD9Q3L8U1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AL512356.2-201ENST00000546955 174 ntBASIC18.77■□□□□ 0.6
CHD9Q3L8U1 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.77■□□□□ 0.6
CHD9Q3L8U1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.77■□□□□ 0.59
CHD9Q3L8U1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
CHD9Q3L8U1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHD9Q3L8U1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHD9Q3L8U1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.76■□□□□ 0.59
CHD9Q3L8U1 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.76■□□□□ 0.59
CHD9Q3L8U1 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHD9Q3L8U1 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.76■□□□□ 0.59
CHD9Q3L8U1 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.76■□□□□ 0.59
CHD9Q3L8U1 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHD9Q3L8U1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms