Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AC016734.2-201ENST00000624325 1377 ntBASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AC100803.2-201ENST00000562459 1963 ntBASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 TSSC2-201ENST00000450217 709 ntBASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 KRT126P-201ENST00000549467 1181 ntBASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 RNF126P1-202ENST00000569893 925 ntBASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 AC004263.2-201ENST00000617183 678 ntBASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 AC012313.10-201ENST00000623509 926 ntBASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTCHD3Q3KNS1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 AP003733.1-201ENST00000491725 852 ntBASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PTCHD3Q3KNS1 AC022898.2-201ENST00000616822 1312 ntBASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 TSPY22P-201ENST00000427496 604 ntBASIC17.47■□□□□ 0.39
PTCHD3Q3KNS1 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms