Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.91■□□□□ 0.94
GABPAQ06546 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.91■□□□□ 0.94
GABPAQ06546 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.91■□□□□ 0.94
GABPAQ06546 MTDHP4-201ENST00000600287 670 ntBASIC20.91■□□□□ 0.94
GABPAQ06546 AP000997.3-201ENST00000623333 2250 ntBASIC20.91■□□□□ 0.94
GABPAQ06546 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
GABPAQ06546 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.91■□□□□ 0.94
GABPAQ06546 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
GABPAQ06546 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
GABPAQ06546 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
GABPAQ06546 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
GABPAQ06546 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.91■□□□□ 0.94
GABPAQ06546 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.9■□□□□ 0.94
GABPAQ06546 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 SIRPAP1-201ENST00000448467 1770 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
GABPAQ06546 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 SPDYE21P-201ENST00000413323 827 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 IGHV3-22-201ENST00000520721 359 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.9■□□□□ 0.94
GABPAQ06546 AC106730.1-201ENST00000566722 1090 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 AC019129.2-201ENST00000609837 1235 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 AC107918.4-202ENST00000641623 219 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.9■□□□□ 0.94
GABPAQ06546 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.9■□□□□ 0.94
GABPAQ06546 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
GABPAQ06546 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 AC104581.1-202ENST00000635932 2618 ntBASIC20.9■□□□□ 0.94
GABPAQ06546 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.89■□□□□ 0.94
GABPAQ06546 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.89■□□□□ 0.93
GABPAQ06546 PRYP5-201ENST00000451909 266 ntBASIC20.89■□□□□ 0.93
GABPAQ06546 OR7E14P-202ENST00000530490 1290 ntBASIC20.89■□□□□ 0.93
GABPAQ06546 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.89■□□□□ 0.93
GABPAQ06546 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.89■□□□□ 0.93
GABPAQ06546 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.89■□□□□ 0.93
GABPAQ06546 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 AC009949.1-201ENST00000623048 1830 ntBASIC20.89■□□□□ 0.93
GABPAQ06546 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.89■□□□□ 0.93
GABPAQ06546 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
GABPAQ06546 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
GABPAQ06546 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
GABPAQ06546 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.88■□□□□ 0.93
GABPAQ06546 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
GABPAQ06546 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
GABPAQ06546 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.88■□□□□ 0.93
GABPAQ06546 AC132938.5-201ENST00000624980 1813 ntBASIC20.88■□□□□ 0.93
GABPAQ06546 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.88■□□□□ 0.93
GABPAQ06546 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
GABPAQ06546 RPS2P28-201ENST00000314255 741 ntBASIC20.88■□□□□ 0.93
GABPAQ06546 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
GABPAQ06546 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.88■□□□□ 0.93
GABPAQ06546 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.88■□□□□ 0.93
GABPAQ06546 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
GABPAQ06546 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.88■□□□□ 0.93
GABPAQ06546 BX005266.1-201ENST00000473402 457 ntBASIC20.88■□□□□ 0.93
GABPAQ06546 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.88■□□□□ 0.93
GABPAQ06546 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.88■□□□□ 0.93
GABPAQ06546 AC008735.5-201ENST00000623544 497 ntBASIC20.88■□□□□ 0.93
GABPAQ06546 AC073592.5-201ENST00000624854 528 ntBASIC20.88■□□□□ 0.93
GABPAQ06546 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.88■□□□□ 0.93
GABPAQ06546 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
GABPAQ06546 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
GABPAQ06546 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
GABPAQ06546 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
GABPAQ06546 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.87■□□□□ 0.93
GABPAQ06546 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.87■□□□□ 0.93
GABPAQ06546 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
GABPAQ06546 AC004817.3-201ENST00000602957 2129 ntBASIC20.87■□□□□ 0.93
GABPAQ06546 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
GABPAQ06546 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
GABPAQ06546 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.87■□□□□ 0.93
GABPAQ06546 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
GABPAQ06546 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.87■□□□□ 0.93
GABPAQ06546 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
GABPAQ06546 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
GABPAQ06546 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
GABPAQ06546 DDX43P3-201ENST00000441064 443 ntBASIC20.87■□□□□ 0.93
GABPAQ06546 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.87■□□□□ 0.93
GABPAQ06546 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms