Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.63■□□□□ 0.89
CTCFP49711 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC20.63■□□□□ 0.89
CTCFP49711 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.63■□□□□ 0.89
CTCFP49711 AL596325.1-201ENST00000563991 1082 ntBASIC20.63■□□□□ 0.89
CTCFP49711 AC008667.4-201ENST00000607370 168 ntBASIC20.63■□□□□ 0.89
CTCFP49711 AC010507.1-201ENST00000633895 436 ntBASIC20.63■□□□□ 0.89
CTCFP49711 AC025048.6-201ENST00000634326 1161 ntBASIC20.63■□□□□ 0.89
CTCFP49711 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CTCFP49711 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
CTCFP49711 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.62■□□□□ 0.89
CTCFP49711 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.62■□□□□ 0.89
CTCFP49711 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.62■□□□□ 0.89
CTCFP49711 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.62■□□□□ 0.89
CTCFP49711 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.62■□□□□ 0.89
CTCFP49711 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.62■□□□□ 0.89
CTCFP49711 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.62■□□□□ 0.89
CTCFP49711 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.62■□□□□ 0.89
CTCFP49711 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
CTCFP49711 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.62■□□□□ 0.89
CTCFP49711 AC004706.3-202ENST00000621574 984 ntBASIC20.62■□□□□ 0.89
CTCFP49711 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.62■□□□□ 0.89
CTCFP49711 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 AL158211.5-201ENST00000623583 2518 ntBASIC20.62■□□□□ 0.89
CTCFP49711 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CTCFP49711 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTCFP49711 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.61■□□□□ 0.89
CTCFP49711 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.61■□□□□ 0.89
CTCFP49711 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.61■□□□□ 0.89
CTCFP49711 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.61■□□□□ 0.89
CTCFP49711 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC20.61■□□□□ 0.89
CTCFP49711 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 AC009093.7-201ENST00000623853 1223 ntBASIC20.61■□□□□ 0.89
CTCFP49711 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.61■□□□□ 0.89
CTCFP49711 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTCFP49711 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.61■□□□□ 0.89
CTCFP49711 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CTCFP49711 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 AC004817.3-201ENST00000602957 2129 ntBASIC20.6■□□□□ 0.89
CTCFP49711 AC006504.4-201ENST00000592118 1568 ntBASIC20.6■□□□□ 0.89
CTCFP49711 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.6■□□□□ 0.89
CTCFP49711 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CTCFP49711 COX5BP8-201ENST00000416911 349 ntBASIC20.6■□□□□ 0.89
CTCFP49711 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC20.6■□□□□ 0.89
CTCFP49711 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.6■□□□□ 0.89
CTCFP49711 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.6■□□□□ 0.89
CTCFP49711 AC051619.7-201ENST00000568314 623 ntBASIC20.6■□□□□ 0.89
CTCFP49711 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC20.6■□□□□ 0.89
CTCFP49711 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CTCFP49711 AC010654.1-201ENST00000615722 808 ntBASIC20.6■□□□□ 0.89
CTCFP49711 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.6■□□□□ 0.89
CTCFP49711 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 AC025580.3-201ENST00000617932 1424 ntBASIC20.6■□□□□ 0.89
CTCFP49711 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTCFP49711 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.59■□□□□ 0.89
CTCFP49711 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CTCFP49711 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.59■□□□□ 0.89
CTCFP49711 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
CTCFP49711 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.59■□□□□ 0.89
CTCFP49711 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CTCFP49711 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms