Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXA1P49639 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXA1P49639 AC004980.1-204ENST00000429707 299 ntBASIC14.88□□□□□ -0.03
HOXA1P49639 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC14.88□□□□□ -0.03
HOXA1P49639 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
HOXA1P49639 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HOXA1P49639 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXA1P49639 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXA1P49639 HYMAI-201ENST00000635591 3347 ntBASIC14.88□□□□□ -0.03
HOXA1P49639 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXA1P49639 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXA1P49639 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXA1P49639 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXA1P49639 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HOXA1P49639 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.87□□□□□ -0.03
HOXA1P49639 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 AC004951.3-201ENST00000418645 1148 ntBASIC14.87□□□□□ -0.03
HOXA1P49639 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
HOXA1P49639 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
HOXA1P49639 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXA1P49639 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
HOXA1P49639 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXA1P49639 AC110285.5-201ENST00000611501 352 ntBASIC14.87□□□□□ -0.03
HOXA1P49639 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXA1P49639 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXA1P49639 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXA1P49639 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXA1P49639 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms