Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
COL8A1P27658 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
COL8A1P27658 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.58■□□□□ 0.08
COL8A1P27658 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC15.58■□□□□ 0.08
COL8A1P27658 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL8A1P27658 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.58■□□□□ 0.08
COL8A1P27658 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 FEM1AP3-201ENST00000403722 1741 ntBASIC15.57■□□□□ 0.08
COL8A1P27658 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.57■□□□□ 0.08
COL8A1P27658 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 LINC00602-201ENST00000629776 2065 ntBASIC15.57■□□□□ 0.08
COL8A1P27658 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.57■□□□□ 0.08
COL8A1P27658 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.57■□□□□ 0.08
COL8A1P27658 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.57■□□□□ 0.08
COL8A1P27658 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.57■□□□□ 0.08
COL8A1P27658 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.57■□□□□ 0.08
COL8A1P27658 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.57■□□□□ 0.08
COL8A1P27658 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
COL8A1P27658 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.57■□□□□ 0.08
COL8A1P27658 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL8A1P27658 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.56■□□□□ 0.08
COL8A1P27658 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.56■□□□□ 0.08
COL8A1P27658 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.56■□□□□ 0.08
COL8A1P27658 VN2R19P-201ENST00000442399 1052 ntBASIC15.56■□□□□ 0.08
COL8A1P27658 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.56■□□□□ 0.08
COL8A1P27658 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 DUX4L17-201ENST00000557360 1267 ntBASIC15.56■□□□□ 0.08
COL8A1P27658 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.56■□□□□ 0.08
COL8A1P27658 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.56■□□□□ 0.08
COL8A1P27658 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.56■□□□□ 0.08
COL8A1P27658 AL008721.1-201ENST00000609964 604 ntBASIC15.56■□□□□ 0.08
COL8A1P27658 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.56■□□□□ 0.08
COL8A1P27658 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.56■□□□□ 0.08
COL8A1P27658 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL8A1P27658 AC079776.2-201ENST00000641154 1609 ntBASIC15.56■□□□□ 0.08
COL8A1P27658 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.56■□□□□ 0.08
COL8A1P27658 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL8A1P27658 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.55■□□□□ 0.08
COL8A1P27658 AC120498.9-201ENST00000339021 3867 ntBASIC15.55■□□□□ 0.08
COL8A1P27658 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.55■□□□□ 0.08
COL8A1P27658 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
COL8A1P27658 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL8A1P27658 IRX1P1-201ENST00000438849 1838 ntBASIC15.55■□□□□ 0.08
COL8A1P27658 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.55■□□□□ 0.08
COL8A1P27658 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.55■□□□□ 0.08
COL8A1P27658 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.55■□□□□ 0.08
COL8A1P27658 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.55■□□□□ 0.08
COL8A1P27658 AC109322.1-201ENST00000524499 1264 ntBASIC15.55■□□□□ 0.08
COL8A1P27658 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL8A1P27658 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.55■□□□□ 0.08
COL8A1P27658 AC012645.4-201ENST00000610691 1061 ntBASIC15.55■□□□□ 0.08
COL8A1P27658 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms