Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC092658.1-201ENST00000505836 891 ntBASIC18.35■□□□□ 0.53
VCANP13611 FAM8A2P-201ENST00000528813 1142 ntBASIC18.35■□□□□ 0.53
VCANP13611 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.35■□□□□ 0.53
VCANP13611 KRT8P47-201ENST00000604727 1398 ntBASIC18.35■□□□□ 0.53
VCANP13611 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 AL158211.5-201ENST00000623583 2518 ntBASIC18.35■□□□□ 0.53
VCANP13611 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VCANP13611 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VCANP13611 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.35■□□□□ 0.53
VCANP13611 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.35■□□□□ 0.53
VCANP13611 AC092552.1-201ENST00000547243 906 ntBASIC18.35■□□□□ 0.53
VCANP13611 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.35■□□□□ 0.53
VCANP13611 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.35■□□□□ 0.53
VCANP13611 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
VCANP13611 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.35■□□□□ 0.53
VCANP13611 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VCANP13611 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.34■□□□□ 0.53
VCANP13611 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.34■□□□□ 0.53
VCANP13611 AC099522.2-201ENST00000607001 744 ntBASIC18.34■□□□□ 0.53
VCANP13611 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
VCANP13611 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
VCANP13611 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.34■□□□□ 0.53
VCANP13611 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 AC106886.1-201ENST00000568660 600 ntBASIC18.34■□□□□ 0.53
VCANP13611 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VCANP13611 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 MIR658-201ENST00000385210 100 ntBASIC18.34■□□□□ 0.53
VCANP13611 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.34■□□□□ 0.53
VCANP13611 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 MIR4538-201ENST00000581377 78 ntBASIC18.34■□□□□ 0.53
VCANP13611 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VCANP13611 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.34■□□□□ 0.53
VCANP13611 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCANP13611 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VCANP13611 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
VCANP13611 KRT17P8-201ENST00000540749 863 ntBASIC18.33■□□□□ 0.53
VCANP13611 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.33■□□□□ 0.53
VCANP13611 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCANP13611 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VCANP13611 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VCANP13611 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCANP13611 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.33■□□□□ 0.52
VCANP13611 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.33■□□□□ 0.52
VCANP13611 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VCANP13611 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VCANP13611 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VCANP13611 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.33■□□□□ 0.52
VCANP13611 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCANP13611 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCANP13611 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VCANP13611 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCANP13611 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCANP13611 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.33■□□□□ 0.52
VCANP13611 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.33■□□□□ 0.52
VCANP13611 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCANP13611 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.33■□□□□ 0.52
VCANP13611 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.33■□□□□ 0.52
VCANP13611 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.33■□□□□ 0.52
VCANP13611 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.32■□□□□ 0.52
VCANP13611 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.32■□□□□ 0.52
VCANP13611 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.32■□□□□ 0.52
VCANP13611 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms