Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
NPHP4O75161 WRB-204ENST00000398753 699 ntTSL 3 BASIC24.95■■□□□ 1.58
NPHP4O75161 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
NPHP4O75161 HNRNPA1P40-201ENST00000426371 1278 ntBASIC24.95■■□□□ 1.58
NPHP4O75161 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
NPHP4O75161 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC24.95■■□□□ 1.58
NPHP4O75161 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
NPHP4O75161 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC24.95■■□□□ 1.58
NPHP4O75161 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC24.95■■□□□ 1.58
NPHP4O75161 ACTL9-202ENST00000612068 1252 ntBASIC24.95■■□□□ 1.58
NPHP4O75161 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC24.95■■□□□ 1.58
NPHP4O75161 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC24.94■■□□□ 1.58
NPHP4O75161 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
NPHP4O75161 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
NPHP4O75161 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
NPHP4O75161 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
NPHP4O75161 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
NPHP4O75161 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
NPHP4O75161 AC107890.1-201ENST00000422478 521 ntBASIC24.94■■□□□ 1.58
NPHP4O75161 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC24.94■■□□□ 1.58
NPHP4O75161 KRT18P32-201ENST00000424695 1287 ntBASIC24.94■■□□□ 1.58
NPHP4O75161 AC005237.2-201ENST00000434368 219 ntBASIC24.94■■□□□ 1.58
NPHP4O75161 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC24.94■■□□□ 1.58
NPHP4O75161 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
NPHP4O75161 NOP2-220ENST00000545915 630 ntTSL 2 BASIC24.94■■□□□ 1.58
NPHP4O75161 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC24.94■■□□□ 1.58
NPHP4O75161 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC24.94■■□□□ 1.58
NPHP4O75161 AL359881.2-201ENST00000602973 570 ntBASIC24.94■■□□□ 1.58
NPHP4O75161 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC24.94■■□□□ 1.58
NPHP4O75161 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC24.93■■□□□ 1.58
NPHP4O75161 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
NPHP4O75161 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
NPHP4O75161 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC24.93■■□□□ 1.58
NPHP4O75161 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC24.93■■□□□ 1.58
NPHP4O75161 AC125807.1-201ENST00000483097 614 ntBASIC24.93■■□□□ 1.58
NPHP4O75161 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC24.93■■□□□ 1.58
NPHP4O75161 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
NPHP4O75161 AC018445.3-201ENST00000624177 1945 ntBASIC24.93■■□□□ 1.58
NPHP4O75161 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
NPHP4O75161 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC24.93■■□□□ 1.58
NPHP4O75161 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC24.93■■□□□ 1.58
NPHP4O75161 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
NPHP4O75161 AC097637.2-201ENST00000624096 1997 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.92■■□□□ 1.58
NPHP4O75161 FO538757.1-201ENST00000623083 1397 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 AL157384.1-201ENST00000445995 2473 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.92■■□□□ 1.58
NPHP4O75161 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
NPHP4O75161 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC24.92■■□□□ 1.58
NPHP4O75161 LINC00982-205ENST00000420957 435 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 FAM58DP-201ENST00000428076 619 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC24.92■■□□□ 1.58
NPHP4O75161 SLC25A39P2-201ENST00000537614 270 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC24.92■■□□□ 1.58
NPHP4O75161 STK25P1-201ENST00000585406 838 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC24.92■■□□□ 1.58
NPHP4O75161 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
NPHP4O75161 MIR6752-201ENST00000618442 71 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
NPHP4O75161 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.92■■□□□ 1.58
NPHP4O75161 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
NPHP4O75161 AL049812.1-201ENST00000432563 2267 ntBASIC24.92■■□□□ 1.58
NPHP4O75161 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
NPHP4O75161 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC24.91■■□□□ 1.58
NPHP4O75161 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC24.91■■□□□ 1.58
NPHP4O75161 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC24.91■■□□□ 1.58
NPHP4O75161 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
NPHP4O75161 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24.91■■□□□ 1.58
NPHP4O75161 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
NPHP4O75161 AC002056.1-201ENST00000395613 760 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 FAM185BP-201ENST00000443595 716 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC24.91■■□□□ 1.58
NPHP4O75161 SPDYE11-202ENST00000450699 704 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 CR383656.12-201ENST00000549567 513 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 TSFM-210ENST00000550559 897 ntTSL 5 BASIC24.91■■□□□ 1.58
NPHP4O75161 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC24.91■■□□□ 1.58
NPHP4O75161 SPDYE9P-201ENST00000570642 692 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 SPDYE10P-202ENST00000612005 668 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 SPDYE8P-202ENST00000612377 668 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 AL390754.1-201ENST00000619088 582 ntBASIC24.91■■□□□ 1.58
NPHP4O75161 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms