Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH5O43196 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH5O43196 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH5O43196 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH5O43196 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.4■■□□□ 1.5
MSH5O43196 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH5O43196 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
MSH5O43196 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH5O43196 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC24.4■■□□□ 1.5
MSH5O43196 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC24.4■■□□□ 1.5
MSH5O43196 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC24.4■■□□□ 1.5
MSH5O43196 AC019070.1-201ENST00000415008 1024 ntBASIC24.4■■□□□ 1.5
MSH5O43196 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 NUS1P1-201ENST00000446295 882 ntBASIC24.4■■□□□ 1.5
MSH5O43196 AC034232.1-201ENST00000506026 1064 ntBASIC24.4■■□□□ 1.5
MSH5O43196 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC24.4■■□□□ 1.5
MSH5O43196 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH5O43196 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC24.4■■□□□ 1.5
MSH5O43196 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH5O43196 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC24.4■■□□□ 1.5
MSH5O43196 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.4■■□□□ 1.5
MSH5O43196 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC24.4■■□□□ 1.5
MSH5O43196 MTND4P34-201ENST00000572715 1371 ntBASIC24.4■■□□□ 1.5
MSH5O43196 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH5O43196 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH5O43196 FST-202ENST00000396947 2538 ntTSL 5 BASIC24.39■■□□□ 1.5
MSH5O43196 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
MSH5O43196 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC24.39■■□□□ 1.5
MSH5O43196 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC24.39■■□□□ 1.5
MSH5O43196 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
MSH5O43196 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
MSH5O43196 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
MSH5O43196 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
MSH5O43196 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
MSH5O43196 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH5O43196 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH5O43196 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH5O43196 AL355143.1-201ENST00000407101 841 ntBASIC24.39■■□□□ 1.49
MSH5O43196 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC24.39■■□□□ 1.49
MSH5O43196 RPSAP41-201ENST00000439695 860 ntBASIC24.39■■□□□ 1.49
MSH5O43196 NME1-207ENST00000480143 964 ntTSL 2 BASIC24.39■■□□□ 1.49
MSH5O43196 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC24.39■■□□□ 1.49
MSH5O43196 AC091057.2-201ENST00000602594 792 ntBASIC24.39■■□□□ 1.49
MSH5O43196 AC068790.2-201ENST00000602601 557 ntBASIC24.39■■□□□ 1.49
MSH5O43196 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
MSH5O43196 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
MSH5O43196 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH5O43196 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC24.39■■□□□ 1.49
MSH5O43196 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.39■■□□□ 1.49
MSH5O43196 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
MSH5O43196 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 KRT8P11-201ENST00000409686 1436 ntBASIC24.38■■□□□ 1.49
MSH5O43196 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH5O43196 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC24.38■■□□□ 1.49
MSH5O43196 AC079781.3-201ENST00000449110 356 ntBASIC24.38■■□□□ 1.49
MSH5O43196 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 ANAPC10-202ENST00000451299 928 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 AP001266.1-201ENST00000531155 1044 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 AL160237.2-201ENST00000556165 472 ntBASIC24.38■■□□□ 1.49
MSH5O43196 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC24.38■■□□□ 1.49
MSH5O43196 MYL12A-207ENST00000579226 947 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 AC092954.1-201ENST00000609121 445 ntBASIC24.38■■□□□ 1.49
MSH5O43196 AC092574.1-201ENST00000609771 420 ntBASIC24.38■■□□□ 1.49
MSH5O43196 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH5O43196 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH5O43196 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
MSH5O43196 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH5O43196 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
MSH5O43196 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
MSH5O43196 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC24.37■■□□□ 1.49
MSH5O43196 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH5O43196 AC007618.1-201ENST00000366455 732 ntBASIC24.37■■□□□ 1.49
MSH5O43196 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms